| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1990 |
|---|
| Symbol | |
|---|
| ID | 8419835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2285460 |
|---|
| End bp | 2286704 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 645038578 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_003198852 |
|---|
| Protein GI | 258406110 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.973618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAAG ACCAAATAAA AAGTGATGGG GTGGCAGATA ATGTGTTTGT CGCTCGCCAG
CCTGTGTTTG ATGCCTTTGG CGAGGTATGG GGTTATGAAC TCTTATTCCG AGCCTCGGGC
GAAGCAAGTA ATGCGGTAGT CGCGGACGGG AAAAACGCTA CATCTCAAGT CCTCATCGAT
GGTTTGGCAA TAGTGAATCA AAGTGTTGGG CCCAAAGCCA AAAAGTTAAT CAATTTCGAT
GCTGAATGTA TTGTGGCCGG TTTGGGATGG GGGCTTCCAG AAAATTCGGT GATTGAAATT
TTAGAACATG TCCCTCCTTC AACAGAGGTT GTGGAGGAAT GTCGCCATCT TTCGACTCGC
TATGAATTGG CTCTGGATGA TTATACAGGT GATTCCAATT TCAATGATTT CCTGCCGTAT
TCGTCCATTG TCAAGGTCGA CGTCCTCGCC CTTGATCGTC AGGGAATACA AGACATAGCT
TCACGACTCA ACAAAAGTGG TCTGACGTTG CTGGCCGAAA AAGTGGAAGA CCGGGAGATG
TACGAGTTTG TTTGCGGCTT GGGGTTTACC CTTTTTCAAG GCTTTTTTTT CAGTCGCCCC
AAGACATTAG GGATGAAAAA ATTGTCCAGC AGTCAAATTT CTCGATTGCA AATTTTGAAA
GCGATTGAAC AAGAACAGGA GATAGAGCGT CTCGTCCGCA TTGTCCAAAA CGATGTTGCT
ATTACCTACC GATTGCTCAA TTATATCAAT TCCGTCGGGT TTGGCTTGGT CCAGGAAATT
TCTTCTGTCA GCCACGCTAT GCGGCTTTTG GGGCAGCGAC ATGTGAAGAG TTGGCTCAGC
GCACTAGTTT TAGCCGATTT TGCCAACCAC GGGGAGAAAC TTGAGATCGC CCATATGTCT
GTTGTGCGAG GCTTTTTCGT GGCCTCGTTT TCTGATGACA TACCCACGAC ACTTCCTTTT
GATTCACTTT TTCTTATTGG CTTATTTTCC TTGCTCGATG CGTTATTGGA CCAGCCGATG
GATGCAATTT TGGATCGTCT GCATCTCCAA GCAGAGATGG CAGCGCCACT CCTTGGTCAG
GCATCCCCGG TTGACCCGCT TTTGGATATT GCCCGCGGGT GTGAATACGG GGATTGGTTT
GCTGTGAAAA GCAGTGCGAG GGCTCTCGGG GCCTCGCCCG GCCACATTGC CACAATCTAC
AATGAAGCAT TGATGCGAGC TCAGGCCTTG CTCAATGCGG TCTGA
|
|---|
| Protein sequence | MSEDQIKSDG VADNVFVARQ PVFDAFGEVW GYELLFRASG EASNAVVADG KNATSQVLID
GLAIVNQSVG PKAKKLINFD AECIVAGLGW GLPENSVIEI LEHVPPSTEV VEECRHLSTR
YELALDDYTG DSNFNDFLPY SSIVKVDVLA LDRQGIQDIA SRLNKSGLTL LAEKVEDREM
YEFVCGLGFT LFQGFFFSRP KTLGMKKLSS SQISRLQILK AIEQEQEIER LVRIVQNDVA
ITYRLLNYIN SVGFGLVQEI SSVSHAMRLL GQRHVKSWLS ALVLADFANH GEKLEIAHMS
VVRGFFVASF SDDIPTTLPF DSLFLIGLFS LLDALLDQPM DAILDRLHLQ AEMAAPLLGQ
ASPVDPLLDI ARGCEYGDWF AVKSSARALG ASPGHIATIY NEALMRAQAL LNAV
|
|---|
| |