| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1984 |
|---|
| Symbol | |
|---|
| ID | 8419829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2277796 |
|---|
| End bp | 2278674 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645038572 |
|---|
| Product | RimK domain protein ATP-grasp |
|---|
| Protein accession | YP_003198846 |
|---|
| Protein GI | 258406104 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.976929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAAA TTGCTGTGGT CGGCACGACC GCCGGCTGGT CCTCTGAAAA ATTGACTGCC
ACAGTGGCCG GACACACAGG CTTCCATCTG CTGGTTGATA TGAACCGCTG CGTCCTGGAT
CTGGAGCGCA ATACCGTGTG GTTCGAAAAC CACGACCTCT CCACGATGGA CGCGATCATG
ATCAAAAAAA TTGGGGCACG GTACTCGCCG GATCTCTTGG ATCGGCTCGA ATATCTCCGT
CTTCTGGAAT CCAAAGGGGT GCCCATTTTC TCCGCCCCGC GAAAAATCAT GGGCGTGCTG
GACCGGCTCA GTTGTACCGT GACCTTGCGC GAGGCCGGCA TTCCCATGCC CCCGACACAG
ATCACCGAGA GCCCTGAACA GGCCCTGCGT ATCGTCAAGG AATACGGCGA GGCGGTCTTC
AAACCCCTGT TCACCTCCAA GGCCCGGGGC ATGGAGATCA TCCGGGCTGA CGACCACCCG
GAGGAGGCCA TAGCCGCCTA CCGCGAAACC AACCCGATCA TGTATATCCA GAAAAAGATC
GAACTGCCGG ATCAGGATCT GGGACTGGCC TTTCTTGGCG GGGAATACCT GACCACCTAC
GCCAGACAAA AAACAAACGG GGCCTGGAAT ACGACCACCA ATTCCGGCGG CAAATACGCC
CCGTTTACAC CGCAGGCGGA AACCATCGAA CTCGCCCGCA AAGCCCAGGC CCTGTTTGGG
CTGGACTTTA CCTGCGTTGA TGTCGCGGAA ACGGAAGAGG GACCGCTGGT TTTTGAGGTC
TCGGCGTTTG GCGGCTTTCG GGGGATCCAG GAGGCAAGCG GTCAGGATGC GGCCCAATTG
TATCTGGACT ACGTTTTGCA GCGCATCGGC CATGTATAA
|
|---|
| Protein sequence | MPKIAVVGTT AGWSSEKLTA TVAGHTGFHL LVDMNRCVLD LERNTVWFEN HDLSTMDAIM
IKKIGARYSP DLLDRLEYLR LLESKGVPIF SAPRKIMGVL DRLSCTVTLR EAGIPMPPTQ
ITESPEQALR IVKEYGEAVF KPLFTSKARG MEIIRADDHP EEAIAAYRET NPIMYIQKKI
ELPDQDLGLA FLGGEYLTTY ARQKTNGAWN TTTNSGGKYA PFTPQAETIE LARKAQALFG
LDFTCVDVAE TEEGPLVFEV SAFGGFRGIQ EASGQDAAQL YLDYVLQRIG HV
|
|---|
| |