| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1978 |
|---|
| Symbol | |
|---|
| ID | 8419823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2270304 |
|---|
| End bp | 2271524 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 645038566 |
|---|
| Product | glycogen synthase |
|---|
| Protein accession | YP_003198840 |
|---|
| Protein GI | 258406098 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | [TIGR02149] glycogen synthase, Corynebacterium family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.215698 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCG GTGTGTTGAC CAATGAATAC CCCCCGCATG TGTATGGCGG GGCGGGAGTC
CATGTTGACT ATTTAACCCG GGAATTGGCC CGCGTGGAAA ACGGCCGGCA CTCCGTCGAG
GTCCTTGCCT TCGGGGACCA GCATGTCGCT CGCAGCACGC TTCAGGTCAA TGGGGTCAAC
GGCGATCTCG GAGCCCGGCC GCAGTATCCG CAATGGGGCA AGGTGGTCGA TCCCCTGTTC
AAGAACCTGC TCATGGCCGC TCAGGCCGAG GCCTGGGACA TCGTGCACTG CCACACTTGG
TACACCCATT TTGCGGGCTG TTTGCTGCAA CAATTGCTGG GAATCCCGTT GGTGCTGACC
ACCCATTCCC TGGAGCCGCA TCGTCCCTGG AAAGCTGAAC AACTGGGCCC AGGTGGCTAC
CGGGCCTCCA CCTGGCTGGA AAAGACCGCC TACCAAAATG CCGACGGCGT GGTGGCGGTT
TCCGGTTCGA TGGCCAGCGA CGTGCAGACC CTGTACGGCG TGGCGCCTGA GCGCGTGCGG
GTCATCCACA ACGGCATCGA TCCCGAGGAA TACCATCCGG GGCAGCAGAC CGCCCCGCTG
GAAGATCTCG GCGTCGACCC CACGGTCCCC TATGTCCTGT TCGTGGGCCG GATTACCCGA
CAAAAAGGGA TCACCCATTT GCTGCGTGCC CTGGAGCAGG TCCGCTCCGG CACCCAGGTG
GTGCTCTGCG CCGCCTCACC CGATACACCG GAGATTGCGC GGGAGACCGA GGCCTTGGTC
CAGCAGCTTC GCGACCAGGG GCATTGCCGG GTGCACTGGT TCGACACCCC GATGCCCAAG
GAGCAGCTCA TACCGTTATA CGCCCATGCG GCAGTCTTTG TCTGTCCCTC CATCTACGAG
CCGTTCGGGA TCATCAATCT CGAGGCCATG TCCTGCGCCA CACCGGTGGT CGCCTCCAGT
GTCGGCGGTA TCCCGGAGAT CGTGGTCCAC GACGAGACCG GGTATCTGGT GGGATTTGAA
CCGGCGGGGA GCGAGGACAG CGATCCCAAA GATCCCGACC GGTTTGCCGC GGATTTGGCC
AAGGCCGTTA ATGCGGTCCT CGACGATCCG GAAAAGGGGG AGGGATTCGG ACGGCAGGCC
CGGCAGCGGG TGCTGAGTCA TTTCAGTTGG CGCTCTGTGG CCGCCCAGAC AATTCAATGG
TATCAGGCCC TGACCGGATA A
|
|---|
| Protein sequence | MRIGVLTNEY PPHVYGGAGV HVDYLTRELA RVENGRHSVE VLAFGDQHVA RSTLQVNGVN
GDLGARPQYP QWGKVVDPLF KNLLMAAQAE AWDIVHCHTW YTHFAGCLLQ QLLGIPLVLT
THSLEPHRPW KAEQLGPGGY RASTWLEKTA YQNADGVVAV SGSMASDVQT LYGVAPERVR
VIHNGIDPEE YHPGQQTAPL EDLGVDPTVP YVLFVGRITR QKGITHLLRA LEQVRSGTQV
VLCAASPDTP EIARETEALV QQLRDQGHCR VHWFDTPMPK EQLIPLYAHA AVFVCPSIYE
PFGIINLEAM SCATPVVASS VGGIPEIVVH DETGYLVGFE PAGSEDSDPK DPDRFAADLA
KAVNAVLDDP EKGEGFGRQA RQRVLSHFSW RSVAAQTIQW YQALTG
|
|---|
| |