| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1957 |
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| Symbol | |
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| ID | 8419802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2239692 |
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| End bp | 2240369 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645038545 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_003198819 |
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| Protein GI | 258406077 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.163102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCCGT GTATCGTTTC CCCGTCGTTG CTGTCCTCGG ACTTTGCGCG CCTGGCCGAA
GAACTCCAGG CCCTGGAACA GGCCGGGGTG CCCTGGGTCC ATTGGGATGT CATGGACGGC
ATGTTCGTGC CCAATATCAC CCTTGGTCCT CCTGTCATCA AAGCGGCCCG GCCCAAATGC
TCCCTCTTTT TTGACGTCCA CCTCATGATT GAGGATCCGG GCCGGTATAT CGAGTCCTTT
GCCGCAGCTG GCGCCGATCT GATCTGCGTC CACGCCGAGG CCTGCCTCCA TCTCGAGCGA
GTGGTCTCCC AGATCGCCGA GGCTGGCTGT CAGACCGCCG TAGCACTCAA CCCGGCGACG
CCTTTAGAGC AGATCGACTA TCTTTTGCCC CAGTTGGACA TGGTCCTCAT CATGAGCGTC
AATCCAGGCT TTGGCGGCCA GTCCTTCATC CCCTTTTCGC TGGACAAGAT CCGGGGGCTG
CGCCACCGTC TGGACAGCCG ACGACTGGGG ACCCGAATTC AGGTCGACGG CGGCGTGACC
ACGGCCAACG CCGCCGAAAT CGTGACCGCC GGGGCCGATA CCCTGGTCTC TGGTTCGGCG
TTTTTCAAAC ACCCCTCCTA CCAGGAGGGA CTTGCAGCCT TCATGGCCCG GATGCAGGGC
AAAGGCGGGC CAGCCTAA
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| Protein sequence | MNPCIVSPSL LSSDFARLAE ELQALEQAGV PWVHWDVMDG MFVPNITLGP PVIKAARPKC
SLFFDVHLMI EDPGRYIESF AAAGADLICV HAEACLHLER VVSQIAEAGC QTAVALNPAT
PLEQIDYLLP QLDMVLIMSV NPGFGGQSFI PFSLDKIRGL RHRLDSRRLG TRIQVDGGVT
TANAAEIVTA GADTLVSGSA FFKHPSYQEG LAAFMARMQG KGGPA
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