| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1930 |
|---|
| Symbol | |
|---|
| ID | 8419775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2212082 |
|---|
| End bp | 2213278 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 645038518 |
|---|
| Product | phosphonopyruvate decarboxylase-related protein |
|---|
| Protein accession | YP_003198792 |
|---|
| Protein GI | 258406050 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3635] Predicted phosphoglycerate mutase, AP superfamily |
|---|
| TIGRFAM ID | [TIGR00306] 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form
[TIGR02535] proposed homoserine kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCCA AAATCGTTTT TTGTATTGCC GACGGCATGG GCGATTATCC CGTCCCCTCC
CTTGGTGGAA AGACTCCCCT CGAAGCCGCG GAGACCCCGG AACTGGACGC GCTCTGCCCC
AACGGTCTGC AGGGGCAGGC CCAGACCATC CCCGAGGGCA TGGGCCCGGG CTCAGACGTG
GCCAATATGG CCCTGCTCGG GTATCCCCCG CGGACGTACC ACACCGGCCG GGGGCCCATC
GAAGCCGCGG CCCAGGGACT TACGCTCGCC TCCAACGACA TTGTCTGGCG GCTCAACCTG
GTCACCACCG ATGGGTGGAC GCCGGAAGCG GTCCTGCGCG ATTACGCCGC TGGCCATATC
GATACGGCCA CGGCGCGGGA TATGATCCTT GAACTGAACG AGACCTTCGG CGACAGCACC
TGGCAACTCG TCCCCGGCAT CCAGTACCGC CATCTCCTGG TCCAAAAAGG GGGTGCGGAC
AGTCCGGAAG CTGAACTCGC CATCCGCCCG CCCCACGATA TCCTCGACCA GCCCATTGGC
GCTGATCTCG AGGCTTTTGG TTCCAGTCCG GCGCTCAAGA CGTTGCTTGC CTCCTCGGCC
GAACGTTTGG CAAGCCGGGG CGGAACCGCC ACGGCCCTTT GGCCCTGGGG CCAGGGCAAG
TCGCTGCATC TGCCCGATTT CAGTGAACGG TTCGGCCTCA AGGGCCAAGT GGTATCGGCT
GTGGATCTGG TCAAGGGACT GGGACGCGCC GCCCAGATGG ACGTGGCGGA AGTGCCTGGG
GCCACTGGTC TGCTGGACAC CAACTACGCC GGGAAAGTCG AGGCCGCGCT GGAATTTCTC
GACCAGGGCG ATTTTGTCTA CCTCCATGTC GAGGCCCCGG ATGAATGCGG TCACGCGGGC
GACCCCGAGG CCAAGCAAGA GGCCATCGCC CGCTTTGACA GCCGCGTTCT CGCGCCCCTG
CGCCAGGCTC TGGGGCAGAC CGCCTATTTC ATGGTCGCTT GCGATCACCT CACACCGGTC
CGGGAACGCA CCCACACCAG CGATCCTGTC CCCTTTCTGC TCTCCGGGCC GGGGCTGCGC
CCGAACACCG CGCACAGCAC GTTCACCGAA GCCACGGCCG ACAGCGCCGA ACTCAGCCTG
TCCGCGGGAG AGGACCTGCT GCCGTTTGTC CTCAAAACCA TCGCCGATCT GAAATGA
|
|---|
| Protein sequence | MLPKIVFCIA DGMGDYPVPS LGGKTPLEAA ETPELDALCP NGLQGQAQTI PEGMGPGSDV
ANMALLGYPP RTYHTGRGPI EAAAQGLTLA SNDIVWRLNL VTTDGWTPEA VLRDYAAGHI
DTATARDMIL ELNETFGDST WQLVPGIQYR HLLVQKGGAD SPEAELAIRP PHDILDQPIG
ADLEAFGSSP ALKTLLASSA ERLASRGGTA TALWPWGQGK SLHLPDFSER FGLKGQVVSA
VDLVKGLGRA AQMDVAEVPG ATGLLDTNYA GKVEAALEFL DQGDFVYLHV EAPDECGHAG
DPEAKQEAIA RFDSRVLAPL RQALGQTAYF MVACDHLTPV RERTHTSDPV PFLLSGPGLR
PNTAHSTFTE ATADSAELSL SAGEDLLPFV LKTIADLK
|
|---|
| |