| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1885 |
|---|
| Symbol | |
|---|
| ID | 8419728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2166314 |
|---|
| End bp | 2167564 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645038471 |
|---|
| Product | Di-heme cytochrome c peroxidase |
|---|
| Protein accession | YP_003198747 |
|---|
| Protein GI | 258406005 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1858] Cytochrome c peroxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0712604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00642624 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCA ATGTCGTACT GACCACCACC ATCTGCCTCG CCCTGCTTCT CCCCTCGCTT
GGTTCGGGCG CTGAGGACAT CCAATGGACG GACCAGGAGA AGCGTCTTAT CGCCAGCATG
CAATTGGACA AGCTGCCGCC CCTGCCGGAC GATCCGTCGA ATGATGTGGA CACGGACCCG
GCTGCGGCGC GCTTTGGGGA AAAGGTCTTT CACGATGCCC GGTTCAGTGC CAACGACAAG
ATTTCCTGCG CCACCTGCCA CCCGGAAGAC AAATCCTTCC AGGACGGGCG TCCAGTGGCC
GTCGGCGTGG GCCGCGTGAC GCGGCGGACC ATGCCGCTTA TCGCTGTGGC CTATAACGAC
TGGTTTTTCT GGGACGGACG CAAGGACACC CTCTGGAGCC AGACGCTGGC CCCGATCGAA
AACCCCCGGG AACACGGTAT CAGCCGGACC GGTTGTGTGG AGTTGATCCG GTCCCAATAC
CGCGACGAGT ACGAGGCGGT TTTCGGGCCG CTCCCCAAGC TGCCCGCCAA CCTCCCGTCC
ATCGCCATGC CCGTGGAATT CGATCAGGAC GCCCTCGAGG CGTGGCGGGA GCTTGATCCG
GCGGTGCGGG ACACAATCAA CACCATTTTC GCCAACACCG GCAAGGCACT GGCCGCCTAT
GTCCGCGTTA TCCTGCCCAG CGAAGCGCCG TTTGACCGCT TCGCCGCCGA CTTGGCAGCC
GGCAACGAGA ATCAGGCCGA TGGCCATCTG TCACAAAAAC AGCAAGCCGG GCTGAAGCTC
TTTATCGGCG ATGCGGGCTG CTTCGGCTGC CACTTCGGTC CCCGGCTGAC CAACGACGGC
TTCCACGACA CCGGCGTCAA CGAGGCCTTC GGTCCGGAAT TCGATGCCGG ACGGGCCAAA
GGCATTACCC AGGTCCAGCA CGACATGTTC AACTGCATGG GGGACTATTC CGACGCCGAG
CCCAAGGAGT GTTCGGCGCT GCGATTCATG GACACGGATC AGGACAAATA CCGCCAGGCC
TTCAAGACCC CGACACTGCG CAACGTGGCT GTCCGCCCGC CGTACATGCA CGCCGGGCAG
ATCGAGACCC TGGAAGAAGT CATCGACTTC TACGCCAAGG AAAGCGAGAC CAATCCTGAA
CTGACCCACG CCGATCTGAC AGAAGAGAAA AAAGACGCGC TGATCGCCTT TATGGAGTCG
CTGACCAGCG ATGTCACGCC GAGGATGGAC GAAGTTTTGA ACTCTCAATA A
|
|---|
| Protein sequence | MRFNVVLTTT ICLALLLPSL GSGAEDIQWT DQEKRLIASM QLDKLPPLPD DPSNDVDTDP
AAARFGEKVF HDARFSANDK ISCATCHPED KSFQDGRPVA VGVGRVTRRT MPLIAVAYND
WFFWDGRKDT LWSQTLAPIE NPREHGISRT GCVELIRSQY RDEYEAVFGP LPKLPANLPS
IAMPVEFDQD ALEAWRELDP AVRDTINTIF ANTGKALAAY VRVILPSEAP FDRFAADLAA
GNENQADGHL SQKQQAGLKL FIGDAGCFGC HFGPRLTNDG FHDTGVNEAF GPEFDAGRAK
GITQVQHDMF NCMGDYSDAE PKECSALRFM DTDQDKYRQA FKTPTLRNVA VRPPYMHAGQ
IETLEEVIDF YAKESETNPE LTHADLTEEK KDALIAFMES LTSDVTPRMD EVLNSQ
|
|---|
| |