| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1691 |
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| Symbol | |
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| ID | 8419522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1943933 |
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| End bp | 1947394 |
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| Gene Length | 3462 bp |
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| Protein Length | 1153 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645038265 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003198553 |
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| Protein GI | 258405811 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.427142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0220248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGTATTC CAAAGGAAAT CCAATCTTTT TTAGCTAGTG ATAAACGGGC CCTGCAGGTC
GGAAAAAGCG GTATCGGCTC CCAGGCCTGT GTGGCGCAGG GGATGCTGGC CAAAGGCCGG
AACGTGGTCG CCGTGTTTCC CGGCCAGAAA GAACTGGACC GGTTCTGGAG TCTGGTCACC
CTTTTTTCCG GCCAATCCGA GCAGGAGGGG GTGTTGTGGG AGCGGCCGTG GGTCAAGCTG
GACGCGTTTC GCCCCGGTTC GACCCGCACA GAGCAATGGG GAGCGCGCTG GGCCGCCTTG
TCGCGTTTGA AATTGGGGAG TCAGCCGTGC GGTCTGGCGC TGACGGCGGA CAACTTTTTG
CCCTATTGGC CGCCCAGCGA GCTTGTGGAC CAGGCCTATT TGTACCTGGT GCTTAACGAG
GACATCGAGA TCGAGGACAT CGCCACCCAG TTGGTGGCCT GGGGGTATGA CCGGGTCGGC
ATGGTCACCC GCTTCGGCGA GTTCGCCGTG CGCGGAGATA TCCTGGACAT CTATACTCCG
GGATACGAAT CCCCGGTGCG CCTAGAATTT TTCGGCGACA CGCTGGAGGG AATCCGTCTT
TTCGAACCGC TGAGTCAGCG CTCAAAACAG TCGATGACTG AAGTCACCGT CATGCCTGCG
GCTCCGGCAT TGGGCGGGGG GCATGAGCGC GATCGCATCC GGGACAAATG GCACCATCTC
TGGACTACCG GCGCATTGGA CAAGCAGGTC AAAGCCCGTC TGGAACAGCA TCTCGAGGAC
GGTGAGGCCG GATTCTGGCC CGGTCTGTAT TACCAACGCC CGGTCCTTTT AGAGGACTGG
TTGCCCAGTG ATCCCGTTTT TATGCTCTGT GAAGCGGATA CCTTGCGTTC CTATCTGGAG
GAAGAGGCGG GCCGCTGGCA GACCGTGCAG CAGGTTTTCG CCAATGGGGA GCAGGCGGAA
ATCCCCAGTG AATTGGTGGT CCGTACACCG CACAACGCCC GGCAGGCCTG GTTGGAAGGG
ACGCAGATCC TCTTTGAGAC TCTGCCCGTG GAGCCGGGAG ACAGTGCGGT CGCCCTGCCG
GAGAAACGGT ACACCCGGTT TGAGGACCTG TTTTGGCGGC CGGACCAGAA GCGGCGGCCC
TGGCACACCC TGTGCGAGTC GCTCAAGACC TGGCGCCGGA CGACCCACCA GACCATCTTG
TTGTTCGATT CCGTCAACGC CCAGCGCAAA TTTCTCTCCC TGATCGAAAA AGAGGGTGTT
CAGTTCCAGA CCTCCTTTGT CCCCGACCAG AAAGGACTCT ACGCCCTGGT GATGCCGTTT
GATGGCGGCA TGGAGCTGCC TTGGCGGGAT ATGCTTGTCC TGGGAGAGGA GGTCCTGCAA
CCGCGCCAGG AACGGGCGGT GGCCCAGAAA CAGACAGCTC GTGATTTTAA GGGCTTATCC
AGTTTTGACG ACCTGCAGAC CGGCGAGTTG CTCGTGCACC GCGATTACGG CTTGTCCCGG
TTCGGAGGCT TGCAGCGGCT GCAAGCCGAC CAGGCGGGGC AGGACTATCT GGTCCTGGAA
TACGCTGACA GCGACAAATT GTATGTCCCT GCCGACCGGC TCAATCTGGT CCAGCGGTAC
CAGGGGGGAG AGGGGGCCGC ACCGGCGCTC GACCGGCTGG GCGGGACCTC GTGGCAGAAG
ACCACCAAAC GCGTGCGCAA GGCCATTGAG CAGATCGCCC ACGAACTGGT CCGCATGTAC
GCCTACAGGC GGGTTGCCAA AGGATTTGCC TATTCCGCGG CCGATGAGTT GTACCGCGAA
TTCGAGGCGT CTTTCGGCTT TGCCGAGACC CCGGACCAGG AAAAAGTGAT CAGCGACGTG
CTCGAGGATA TGGACAGTCC CGAGCCCATG GATCGGTTGG TCTGCGGCGA CGTCGGGTTC
GGCAAGACCG AGATTGCCAT GCGGGCGGCG TTTCGGGCCG TGGCCGACAG CAAGCAGGTC
GCTTTGCTCT GCCCGACAAC GGTTCTGGCC GAGCAGCACT ATCAGAATTT CCGTCAGCGC
ATGGAGCCCT TCGAGGTCCG GGTTGGACTC TTGAGCCGTT TTGTGCCCAA GGCCCAGCAG
CGTAAGACCC TGGAAGCAGC GGGCCGGGGA GAAATCGACA TCCTGATCGG CACGCACCGG
CTTTTGTCCC AGGATGTGCG GCTGCCGCAG CAAAGTCTGC TCATCCTCGA CGAGGAGCAG
CGTTTCGGGG TCAAGCACAA GGAAAAGCTC AAGGAAATCC GGAAGACTCT GGATGTTTTG
ACCCTGACCG CCACGCCCAT CCCCCGCACC CTCCAGCTCT CCCTGTCTGG AGTGCGCAGT
CTCAGCGTCA TCGAAACGCC GCCGCCGGAA CGCAAGGCCG TGGAGAGTTC GCTGATCGAA
CGCGAACCCG GCCGATTGCA AGAGATCCTG CAGCGCGAAG TGGATCGTGG CGGGCAGGTC
TTTTTTGTTC ACAACCGGGT CCGGGGGTTG GCTGAGGTGC GGGACATGGT CCAGCATCTC
GTGCCTGAGG CCCGAGTGGG CATGGCCCAC GGCCAGATGG CCGAGCGGCG CCTGGAGGAA
TCCATGCACC GTTTCTGGCA CGGCGAACTC GATATCCTGG TCTGCACCGC TATCATCGAA
TCTGGTCTCG ATTTCCCCCG GGCCAACACC TTGATCGTCG ACCAGGCCCA CATGTTCGGC
CTGGGCCAAT TGTACCAGCT GCGGGGCCGG GTCGGTCGCT CCAAGCGCCA GGCCTACGCC
TATTTCGTCG TTCCCTCTCT GGACAACCTC CCGGCTGACG CCCGGAAGCG GTTGCAGGCC
ATCCTGGAGG CGGACTATCT GGGGGCGGGA ATCCAGGTCG CCATGCGCGA TCTGCAACTC
CGGGGAGCAG GAAATCTCCT CGGGGAGAGC CAGTCAGGAC AGATCAGCAA AGTCGGTCTG
GACCTGTTTC TGGAAATGCT GGAGGAAGAG GTCCGCAAAA TTCGGGGCGA AGCCTTGCCG
CCGCAGACCG ATCCGGAACT CCAGATCGGG TTTGCAGCCC ATATTCCCGA GAGCTTTGTC
CCGGACACCG GCGAGCGTCT GCGGTATTAC AAGGCGCTGT CCTCGGCCGG TTCGCAGAAG
GAGCGCGAGA CGCTTTTGGA GGAACTCCAG GACCGTTTTG GGGTGCTGCC CGAGCCTCTG
CTCGCCTTTG CCGCTGTGCT GCAACTCAAA GGGGTTTTGG CCCGCCTTCA GGCCGAACGG
GTCCAATTGT ATCCGCAGCG AGTGGTTGTT TCCTGGTCTG AAGAGGTCCA GGCCGTGGAT
CCGGCCAGAC TGGTGGCCTG GGTCGGAGAG CAGGGCGACC GGGCGCGATT GCAACCCCCG
GCCAAATTGG AGTTGCGCTT GCCGGAAAAG CAAAGTATTG CCGATGCAGT CACGGAAATC
AGCCGTGAAC TGGAAGGACT TCTTCCTTCT CAGACAAAAT AA
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| Protein sequence | MRIPKEIQSF LASDKRALQV GKSGIGSQAC VAQGMLAKGR NVVAVFPGQK ELDRFWSLVT
LFSGQSEQEG VLWERPWVKL DAFRPGSTRT EQWGARWAAL SRLKLGSQPC GLALTADNFL
PYWPPSELVD QAYLYLVLNE DIEIEDIATQ LVAWGYDRVG MVTRFGEFAV RGDILDIYTP
GYESPVRLEF FGDTLEGIRL FEPLSQRSKQ SMTEVTVMPA APALGGGHER DRIRDKWHHL
WTTGALDKQV KARLEQHLED GEAGFWPGLY YQRPVLLEDW LPSDPVFMLC EADTLRSYLE
EEAGRWQTVQ QVFANGEQAE IPSELVVRTP HNARQAWLEG TQILFETLPV EPGDSAVALP
EKRYTRFEDL FWRPDQKRRP WHTLCESLKT WRRTTHQTIL LFDSVNAQRK FLSLIEKEGV
QFQTSFVPDQ KGLYALVMPF DGGMELPWRD MLVLGEEVLQ PRQERAVAQK QTARDFKGLS
SFDDLQTGEL LVHRDYGLSR FGGLQRLQAD QAGQDYLVLE YADSDKLYVP ADRLNLVQRY
QGGEGAAPAL DRLGGTSWQK TTKRVRKAIE QIAHELVRMY AYRRVAKGFA YSAADELYRE
FEASFGFAET PDQEKVISDV LEDMDSPEPM DRLVCGDVGF GKTEIAMRAA FRAVADSKQV
ALLCPTTVLA EQHYQNFRQR MEPFEVRVGL LSRFVPKAQQ RKTLEAAGRG EIDILIGTHR
LLSQDVRLPQ QSLLILDEEQ RFGVKHKEKL KEIRKTLDVL TLTATPIPRT LQLSLSGVRS
LSVIETPPPE RKAVESSLIE REPGRLQEIL QREVDRGGQV FFVHNRVRGL AEVRDMVQHL
VPEARVGMAH GQMAERRLEE SMHRFWHGEL DILVCTAIIE SGLDFPRANT LIVDQAHMFG
LGQLYQLRGR VGRSKRQAYA YFVVPSLDNL PADARKRLQA ILEADYLGAG IQVAMRDLQL
RGAGNLLGES QSGQISKVGL DLFLEMLEEE VRKIRGEALP PQTDPELQIG FAAHIPESFV
PDTGERLRYY KALSSAGSQK ERETLLEELQ DRFGVLPEPL LAFAAVLQLK GVLARLQAER
VQLYPQRVVV SWSEEVQAVD PARLVAWVGE QGDRARLQPP AKLELRLPEK QSIADAVTEI
SRELEGLLPS QTK
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