| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1659 |
|---|
| Symbol | |
|---|
| ID | 8419490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1911242 |
|---|
| End bp | 1913599 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038233 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_003198521 |
|---|
| Protein GI | 258405779 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.233969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.903835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTGGG AAGGGTTCCT CTCGTTTCTC CGCCAGCGGC GCCGGCTCGT GCAGGAGACT
GCTGAGCAGG GGGATCTGCG TTCCAGCGCC CGCGCCGCGC AGCGAACCCT TTTTGTCCTC
AGGCAGACCA GACCCCTGGC CGCCCGAAAG GGATTGACCA AGCAATGGCG CAAAATGGAG
GACTATTTTG CTGGCCGCAG TGAACCCGGC CTCGGAGCGG AGGAACCCGC AGGAGGCGAA
GTGGCCTTAG GCACCGGCCA GGGTGTCTTG GAGCGGGCTC GCAAGCGGTG TGCCAATGGT
GATTATGAAG GCGGCCTGAC GGTATTGTTG CACGAGTACC GCAACGGCAA ACGGGATCCG
GTGTTGTTGC GCTTTGCCGC TGAATGTTTC GAGCACAGCA ATCGCTACCA GGAGGGGGCG
GATTTTATCG CCAGCGCCCT TTTGGAGCAG GAATTCCCTC CCGCCGACCA AGCCCATCTC
CAATTCGTCT TGAGCGGGTG GTATCTCCAA CTCGGCAAGA CGAATGAGGC CCGGCAGGCG
TTGTGGAAGG TCCAACGCCT CGATCCCCAT TACCCAGGAC TGCAAGGCCG CCTCCAGCAT
CTTTTGCCCG CCCAGACCGA GAAGCCGAAA AGCCGCTACG GGCTGCTGCT CGCCTCGGGC
CAGCTCAGTG AAGAACAACT GCAGCAGGCC ACCGAGGAAG CCAATAAGCG TGACGGTGAT
GTGGACCAGG TCCTGCTTCG CGATTACGGC ATCGACCGTG ACGTCCTGGG GGCCTCCCTG
AGCGCTTTCT ACGATGTCGA TTTTGTCGCT TTTGACCGCG AGATTGACCC GCCGTTCGGG
CTCTTTGAAA AACGGAGTCT GGACCCGGAC TTCCTCAAAC GCTACGGCTG GGTCCCCTTT
GCAGAAGAAG GGCAGGACAT CGTGGTCCTG ATGAGCAATC CTTTTGACCT TGGCCGCATG
GATGAGATCC GGTTTATTCT GGGCACCAGC CGGATCGTCC CCAAGGTCGC CCTTCAGGCT
GATATCCAGG CCTATATCGA CCATTTCTTC CAAAGCTTCG GGCCTTCTGA AGAAATTTTT
TCCTTTGATG AGGAGGTTGT TGCCCTGGAC GAGGACGACA GCCGTTTGGA AGGGGTTGAA
GAGGTCTCGG AGGAAGACAG CGAAGTCGTT CGGCTGGTCA ATTCCCTGCT TATCGAAGCC
TGGAAGCGGC AGGCCTCGGA CATCCATATT GAGCCCGATT CCCGCAACCG GTCCTGCACG
ATCCGGCTGC GCGTTGACGG GACCTGCCAT GAATTTCGCA AATTCCGCAT CGGGCTGGCC
CGCCCCCTGG TCTCGCGGGT CAAGATCATG GCCCATCTGG ACATTGCCGA ACGCCGCCTG
CCCCAGGACG GCAAGATCAA GCTCAAATTG CCGGGGATGA ACACGGTGGT CGAATACCGG
GTGGCGACCC TGCCCACGGT CGATGGGCAG GAGGATGTGG TCATGCGGGT TTTGTCCTCG
GGCAAACCGC TGCCTCTGGA GCAATTGGGG CTGCATTCCG GCGTCCTCGA GGCCTTTAAA
CGCATGGTCT ATCGCCCCTA CGGGCTGTTG CTGGTCGTCG GGCCCACGGG GTCGGGAAAG
ACGACGACCC TGCACTCTGC CGTCAGCTAT ATCAACAGCT CGGATCGGAA GATCTGGACC
GCCGAGGACC CGGTGGAGAT CACCCAGACC GGCCTGCGCC AACTCCAGGT CCAGCCGAAG
ATCGGTCTGA CCTTTGCCGC GGCGCTGCGA TCCTTTTTGC GCGCCGACCC GGACGTGATC
ATGATCGGGG AGATGCGCGA CGAGGAGACC GCCCATATCG GGGTGGAAGC CTCGCTGACC
GGGCACCTCG TCTTTTCAAC CCTGCACACC AATTCCGCTC CGGAAACCAT CACCCGTTTG
CTGGACATGG AACTGGATCC CTTCAATTTT GCCGATTCCC TGCTCTGTGT GCTGGCCCAG
CGGTTGGTCA AGACCTTGTG CCCGCGGTGC AAGAAACCAT ATACGCCGTC TGCCGAGGAG
ATAGAGGAGT TGCGTCTGGA ATTCGGCACG AATTGGGAGA CCGCGGTCCC CGAACAATGG
CGGGCTGAAC CGGTTCTTTA CCAGCCCCAC GGCTGTTCCT CGTGCCTGGG CGGGTATCGC
GGCCGGACCG GCATTCATGA ATTGATGCTC AATACCGGGG GGTTGAAGAC CTGCATCAAA
CACCGCAAGC CCACGGAGGA ATTGCGGCTC CAAGCGGTGG AGGACGGCAT GCTCTCGCTC
AAGGAGGATG GCCTGTTGAA GGTCATTGAG GGGTTGACGG ATGTGAGTCA GGTCCGCAAA
GCCGTCGGAG GAAGCTGA
|
|---|
| Protein sequence | MSWEGFLSFL RQRRRLVQET AEQGDLRSSA RAAQRTLFVL RQTRPLAARK GLTKQWRKME
DYFAGRSEPG LGAEEPAGGE VALGTGQGVL ERARKRCANG DYEGGLTVLL HEYRNGKRDP
VLLRFAAECF EHSNRYQEGA DFIASALLEQ EFPPADQAHL QFVLSGWYLQ LGKTNEARQA
LWKVQRLDPH YPGLQGRLQH LLPAQTEKPK SRYGLLLASG QLSEEQLQQA TEEANKRDGD
VDQVLLRDYG IDRDVLGASL SAFYDVDFVA FDREIDPPFG LFEKRSLDPD FLKRYGWVPF
AEEGQDIVVL MSNPFDLGRM DEIRFILGTS RIVPKVALQA DIQAYIDHFF QSFGPSEEIF
SFDEEVVALD EDDSRLEGVE EVSEEDSEVV RLVNSLLIEA WKRQASDIHI EPDSRNRSCT
IRLRVDGTCH EFRKFRIGLA RPLVSRVKIM AHLDIAERRL PQDGKIKLKL PGMNTVVEYR
VATLPTVDGQ EDVVMRVLSS GKPLPLEQLG LHSGVLEAFK RMVYRPYGLL LVVGPTGSGK
TTTLHSAVSY INSSDRKIWT AEDPVEITQT GLRQLQVQPK IGLTFAAALR SFLRADPDVI
MIGEMRDEET AHIGVEASLT GHLVFSTLHT NSAPETITRL LDMELDPFNF ADSLLCVLAQ
RLVKTLCPRC KKPYTPSAEE IEELRLEFGT NWETAVPEQW RAEPVLYQPH GCSSCLGGYR
GRTGIHELML NTGGLKTCIK HRKPTEELRL QAVEDGMLSL KEDGLLKVIE GLTDVSQVRK
AVGGS
|
|---|
| |