| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1633 |
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| Symbol | |
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| ID | 8419464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1881291 |
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| End bp | 1884386 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645038207 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_003198495 |
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| Protein GI | 258405753 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.720693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCCCGC AGGCTACCAA TCAGGCGAAA TTTGCCCGGC CGGCCCTGTC CCAGGTCGTG
CCCCGGGCTC GCCTTTTTGA CCGCCTCAGG GAGCATGGGC GGTCCTCTTT TCTTTGGATT
GCCGCCCCGG CAGGCTTCGG CAAGACTACC CTTGTCGCGA GCTATCTCGA GGCGCAGGAG
GTCCCATCTG TCTGGTTCCG TCTGGACGGT GGGGACGGGG ATCCAAATTC CTTTTTCCTG
ACTCTGGAGC AGGCGGTGCG GTTGGTGTTT CCCGATGCGC CGGCATGTGT CGGGCCTCGC
TTTGAACAGC CCCTGTCTTC TTTGTCCCGG AATTTTTTTT CGCACCTCTC CCTGGTCTGC
GCGCCCCAGA CCTATCTCGT CTTCGACAAT GCTCATGAAC TCGAGGACAG CCACGAATTT
TGGGAAATGC TCAGCACCGG CCTTGCCTGC GCGGGTCCAG CCCTGCGGGT GGTGTTTATG
AGCCGCTCCA GCCCCCCGGA TCCGTTTGTC ACTCTTCTTG CCAGTGACCG GCTCCGGGAA
CTGCCGGCCG AGGAACTCCG CCTCAATCGG GAGGAAGTGG TGGAAATGGT CAGACGGGAC
CCGCCCCAGG CTGGTATCGG CAGTGCACTC ATTCCCAATC TTCTTGCGGC CTGCAACGGG
TGGGCGGCCT GTTTGCGGCT CGTTCTGCGC CATTTGCGGT TTGCGCCGTT ATCGGCCCAA
TGGGTTGATC TGGACCGGCC GCCACCTGAA TTGGTGACCT ATTTTTCGAC AGAACTGTTC
CAGGCCATCG ACCCTGATTT ACGCTGCTTT CTCCTCAATC TGGCGGTTTT TCCCTGGTTT
GACGCTGACA TGGCCACACG TCTGACTGGG GTGGCGGAGG CCGCGTCCAT TTTGGAGCGG
ATGGCCGGGG AGAGTTTTTT CACCTCAGTG CACCGTTCGG CCCCGGATGC GCCTTCCATC
TATATTTTCC ATTCCCTGTT CCGGAATTTT CTGCGCGTCG AGGCCAGAAA GATCTTTTCT
TCTGAACAGT GGCAGGACCT CTTCCAGCGC GCCGGGAGGC TGTTGGAAGA GGCTGGGGAT
GCAGAAGCAG CCATCAACGC CTACAGTGCA GCCGGGGACA CCGAAGCCTG GGTGGCGACC
GCCTTGCGAC ACGCTCCGTC CTTACTCGCC TCGGGGCGGC ACAAGAATCT GGAGCGGTGG
CTGGCTCCCT TACCGGCGCA GTGCCAAAAG CGCTGGCCGT GGACGGTTTT CTGGCTGGCC
GGCAGTCGAT TTCCGGAATC CATTGCCCAG AGCAGGGACC TCTACGCCCA GGCCCTGGAT
CTGTTTCAGG ATCAGGGAGA CCACCGGGGG ATGCTTCTGG CCTGGGCGGG GCGGATGGCC
TGTCTCATCC ATGGCCAGGC GCCGCGGCCC GCTGTCGTTT CGGCTTTGGA GCTGTTCGAC
ACCGACCTGA CCACGTTCTA TTCCCTGGAG AAAGACGAAT GGACCCGGGC CGTGGTCGCT
GCAGCGGTGT TTCTGGCCAA GGTCCTCTGT GCCCCTGAAC CGGAGACCAT CCGGTGGGGT
GAGACCGCCC TCGGCTTCGC AGAGCGTCTT CAGGCAAAAG ACCTGCTCAT TCACGTCTGT
TTCGGCGCTG TGTTGTATTT TTTGCCTCGC GGGGAAAACG AACGGCTGGC GGGCCTGATC
ACGCAGGTAC GATTTCAGTG CTCCGTGCCA GCGTTGCCGG CGTTGCCAGC TGCAACGCTG
CTGGCCACGG ACATGCTGGG ACGGATGACC CAGGCCCGGG AGGAAGAGGC CCTGGCCTTG
GCGACACAAG GATTGCAGCT TGTGCGGCAA AGTGGGGTCA CCCTTTTTGA GGCCTTTTTT
TTGGGCTATA GTGCGGCCTG TGCCATGAAT ACTGGAGATC TTGAGGCGGC CGAGCGTTTT
TTGGACTCGA TGGCCAAGGC TTCGCTTGCG ACCCGGCGGT GGGACCGTTC ACTGTATTGT
TTTCTCAGCG CCCGGTTGTC TCTGCTCCGG GGAGCCTATG CCGATGCTGA ACGGTGGGTT
CGTCAAGTGC TCGACCGGGA GGAAGACGAG GGGCCCCTTG GCACCCTTTG TCTGAGTCTG
GTGGGCGCTG CCCAGATCGC TTTTTGTCTG GGATGGAGGG AGCAGGCGGA AGAACGACTC
GCCCAGGCCG GCGTTTTGGC CCGCCAGTAT CAGTTCACGC TTGCCGAATG GGCTGCGGCA
ATGGCGCAGG CGTATTGGGC GCTGGCCGAG GGCGACCGTG ACAGCTGCCG CGCCGTATTG
AAGCCGGCGC TCGCTCTTGG GCGGCGGAAC ATGCTGTACG TCACGCTTGT CGATGTCCCG
GCCCAACTCG CCGAGGTCTG TGTGGCGGCT TTGGAGGAGG GGATGGAAGT CCCGTATGTC
CAACGCCTGG TCAGACAACG GCGGCTGCTC CCGTCCCGTC CGCCTCTGCA TGTCCAGAAC
TGGCCCTGGC GGTACCGGAT TTTTACCCTG GGCGTGTTTG CCGTGCAGCG AAATGAGCGG
GAAATGCGTT TCGGCGGAAA AGCGCCGCAG CAAACCCTCA ATGTGTTGAA AGCCTTGATC
GCCTGTGGGC GTGAACAGGT TCCCTGTCAC CTGCTCAGTG ATCTGCTCTG GGAGGAAGCG
CCAGGTGACG CCGCGCACAA CGCCTTGAAG ACCCAGGTCC ACCGACTGCG CCGGCTGTTG
GGCGACCCCA AGGTCCTGAC CTGGCAGGGT AAGCGGCTGA GTCTGGACCC CTCACTGGTC
TGGGTGGATG TCGGGGCCCT GAGCAGCATC TTTGAGCGGT TCGGAAGCGG GGAACTGGCC
CTCGCCCCAA CCGATGTCGT GCGGCTGGTG TTGGATCTCT ATAAAGGACC GTTTTTACCC
GAGATCGAGG AGAGTTGGGT CTTTGAGCCA AGGCGGAGGT TTGCGGCGTT GTTCAGCCGC
GTTGTGACCG CACTCGGCCG GAGACTGGAG GAGACGGGGC AATGGATGGA GGCGCTTTTT
CTCTATAGTC AGGCCCAGGA ACGGGAGGCG AATGGGGGGA GGTGGGACAA GCGGATCGAG
TACGTACGGG GCAAACTCAA CGGGGGAGCG CTTTGA
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| Protein sequence | MCPQATNQAK FARPALSQVV PRARLFDRLR EHGRSSFLWI AAPAGFGKTT LVASYLEAQE
VPSVWFRLDG GDGDPNSFFL TLEQAVRLVF PDAPACVGPR FEQPLSSLSR NFFSHLSLVC
APQTYLVFDN AHELEDSHEF WEMLSTGLAC AGPALRVVFM SRSSPPDPFV TLLASDRLRE
LPAEELRLNR EEVVEMVRRD PPQAGIGSAL IPNLLAACNG WAACLRLVLR HLRFAPLSAQ
WVDLDRPPPE LVTYFSTELF QAIDPDLRCF LLNLAVFPWF DADMATRLTG VAEAASILER
MAGESFFTSV HRSAPDAPSI YIFHSLFRNF LRVEARKIFS SEQWQDLFQR AGRLLEEAGD
AEAAINAYSA AGDTEAWVAT ALRHAPSLLA SGRHKNLERW LAPLPAQCQK RWPWTVFWLA
GSRFPESIAQ SRDLYAQALD LFQDQGDHRG MLLAWAGRMA CLIHGQAPRP AVVSALELFD
TDLTTFYSLE KDEWTRAVVA AAVFLAKVLC APEPETIRWG ETALGFAERL QAKDLLIHVC
FGAVLYFLPR GENERLAGLI TQVRFQCSVP ALPALPAATL LATDMLGRMT QAREEEALAL
ATQGLQLVRQ SGVTLFEAFF LGYSAACAMN TGDLEAAERF LDSMAKASLA TRRWDRSLYC
FLSARLSLLR GAYADAERWV RQVLDREEDE GPLGTLCLSL VGAAQIAFCL GWREQAEERL
AQAGVLARQY QFTLAEWAAA MAQAYWALAE GDRDSCRAVL KPALALGRRN MLYVTLVDVP
AQLAEVCVAA LEEGMEVPYV QRLVRQRRLL PSRPPLHVQN WPWRYRIFTL GVFAVQRNER
EMRFGGKAPQ QTLNVLKALI ACGREQVPCH LLSDLLWEEA PGDAAHNALK TQVHRLRRLL
GDPKVLTWQG KRLSLDPSLV WVDVGALSSI FERFGSGELA LAPTDVVRLV LDLYKGPFLP
EIEESWVFEP RRRFAALFSR VVTALGRRLE ETGQWMEALF LYSQAQEREA NGGRWDKRIE
YVRGKLNGGA L
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