| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1506 |
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| Symbol | |
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| ID | 8419335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1749615 |
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| End bp | 1751072 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645038080 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_003198370 |
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| Protein GI | 258405628 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0243609 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAGA TGAAAGTTGG TTGGATTGTA CTTGGTGTTC TGCTTCTCGG CGGCCTGACG
TATGTTCTCA GTACAAAGGA CGCTGATAAA AGCGGCCCAC CGCAACACAC CAGCGAGACT
GCGCAGGCCA CGCTTCCCCT CGACGCCCAC ATACAGGAAA CCTCCACAGA CGATCTGCCC
GGCCTTATCG ACAAGCGGTA CATTCGCGTC CTGACCACGG TGAACCGCAC CAATTTCTTT
ATCGCCGAGG GGCACCTCGT CGGCTACGAA TATGCCCTGC TCAAAGGGTA CCAGGATTTC
CTGAACAGCA ATCTCGACAA CCGGGACCTG AAGATCGTCC TGGAATTCAT TCCCGTGGCC
CGGGATGAAT TGATCCCCGG ACTCCGGGAA GGCTATGGCG ATATCGCTGC CGCCGGGTTG
ACCGTCACCC CAAAGCGAAG TGGGAAGGTC GATTTCACTA CCCCTTACCT CTCCGGTATT
GACGAGGTCG TGGTCACCCA TGCGTCCATC CGGGATCTTG AACACCTCAG CGACCTGAGC
GGCAAGGAAG TCTTTGTTCG CCAAAGCAGC AGTTATTTTC AAAGCTTGCA GCGCCTCAAC
GACAGGCTCA AAGAAGACGC TCGCAAGCTG GTCGACATCA CCGCCTTGAG CGAAAATCTG
GAAACCGAAA GCATCCTGGA AATGGTCAAC AGCGGCGCGC TGGGCATAAC CGTGGCCGAC
AGCCATATCG CCCAGGCCTG GTCCAAAGTC TTGCCAGACA TCCGCATCCA CGAGGATCTC
GTCCTGCGCG AGGGAGCACA GATCGCCTGG ATGGTGCGCC AGGAGAACCC CAAACTGCGA
CAAAGCCTGA ATGCCTACCT CAAGGACCAC AAAAAAGGGA CCCTGCTCGG CAACATCTAT
TTCAACCGCT ATTACAGCAA GGCTGACCAA CTGAAGAATC CCATCGAGAT CGAGCAGTGG
AACAAGGTCA AACAGTACAA GTCCGTCATC CAGAACTACG CGGACAAATA CAATTTCGAC
TGGGTCTTAC TCCTCGCACT CGCCTTTCAA GAATCCGGAC TCGAGCACGA CGCCCGAAGC
GACGCCGGAG CCGTGGGCTT GATGCAGGTA CTCCCCTCCA CGGCCAGTGA TCCGAAAATC
GACATTCCCA ACGTCCAGAA TCTCAACAAC AACGTCCACG CTGGCGTCAA ATATCTCCGG
TTTCTCATCG ACCGGTACTA TTCGGACGGG GACCTTCGCC CGCGGGACAG GATCCGTTTT
GCCCTGGCCG CGTACAATGC CGGGCCGGCC AAAATCCGGA AGGTACGCCG CCTGGCTGCG
GAGATGGGGC TCAATAAGGA TAGATGGTTC CGCAATGTGG AACTCGCGGC CTTGCGGATC
ATCGGGCAGG AAACAGTGCG GTATGTGAGC AATATCAACA AGTACTACGT GCTGTATCAG
ACACTTATAC GTAATTAA
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| Protein sequence | MPKMKVGWIV LGVLLLGGLT YVLSTKDADK SGPPQHTSET AQATLPLDAH IQETSTDDLP
GLIDKRYIRV LTTVNRTNFF IAEGHLVGYE YALLKGYQDF LNSNLDNRDL KIVLEFIPVA
RDELIPGLRE GYGDIAAAGL TVTPKRSGKV DFTTPYLSGI DEVVVTHASI RDLEHLSDLS
GKEVFVRQSS SYFQSLQRLN DRLKEDARKL VDITALSENL ETESILEMVN SGALGITVAD
SHIAQAWSKV LPDIRIHEDL VLREGAQIAW MVRQENPKLR QSLNAYLKDH KKGTLLGNIY
FNRYYSKADQ LKNPIEIEQW NKVKQYKSVI QNYADKYNFD WVLLLALAFQ ESGLEHDARS
DAGAVGLMQV LPSTASDPKI DIPNVQNLNN NVHAGVKYLR FLIDRYYSDG DLRPRDRIRF
ALAAYNAGPA KIRKVRRLAA EMGLNKDRWF RNVELAALRI IGQETVRYVS NINKYYVLYQ
TLIRN
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