Gene Dret_1468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1468 
Symbol 
ID8419297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1696925 
End bp1697620 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content64% 
IMG OID645038043 
Productanti-ECFsigma factor, ChrR 
Protein accessionYP_003198333 
Protein GI258405591 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.732817 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0198654 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAGGG GACTGAGGCC CCGTATTCTG GAGGGATGCA CAATGGAGCT GTCCGACGCC 
GTCAACTGGT ATTACTTGCT GCGCGAATAC TACCTGCTCT ACCGCACCCT GTCCGCCGGC
GGCAGCAAGC CCATCCGGCG CCACAAACGC GACGTTCGCG AACGCATCAG CCAGACCATG
CACCCGAAAA CGCCGGTAGT GCACCGCGAA CCCGCCGAAA AGCCGGTCTG CGCCTACTTG
CAACGCGCCC TGGACCAGGC TCCGGCTGCC GATCGCGGGG TGGTCACCAC GCTGCATTCC
TTGCGGCCCC ATTTGCATTG GGAATACGGC TACCAGCGCT TGCCCGCCCA TCTGGCCCGA
AAATACGCCT ATGCCGAATG TGTGGGGCCG CGCGGGCCAG TGGTCTCCGA GCGTCTGATT
CTCGGGCTGG TCCTGCTCGC GCCAGGCACC ACCTACCCCA CCCACGCCCA CCAGACGATC
ACCGAATCCT ATATCGGCCT CAGCGGGGCC TTTTCTGAAA ACGATGTCGG GGTCTTCGGC
CCCAAGTCGC TGATTTTGAA CCCGCCAGGC CGGCGCCACC GGATCACGGT CGACAGCTAC
GAGCCCTGCC TGCTCGCCTT TGCCTGGACC GGCTACAGCC GGGATCTTGA TGATCCAGGC
ATGTGCTTTA GCCCCAGGAC CCCGCAAGCG CTGTAA
 
Protein sequence
MERGLRPRIL EGCTMELSDA VNWYYLLREY YLLYRTLSAG GSKPIRRHKR DVRERISQTM 
HPKTPVVHRE PAEKPVCAYL QRALDQAPAA DRGVVTTLHS LRPHLHWEYG YQRLPAHLAR
KYAYAECVGP RGPVVSERLI LGLVLLAPGT TYPTHAHQTI TESYIGLSGA FSENDVGVFG
PKSLILNPPG RRHRITVDSY EPCLLAFAWT GYSRDLDDPG MCFSPRTPQA L