| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1346 |
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| Symbol | |
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| ID | 8419175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1572411 |
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| End bp | 1575119 |
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| Gene Length | 2709 bp |
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| Protein Length | 902 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645037922 |
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| Product | cyclic nucleotide-binding protein |
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| Protein accession | YP_003198212 |
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| Protein GI | 258405470 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.761753 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAAC AGTCGCCCCG TCAGGACCAG GCCTCCGACA AGTTGCAGGC CCCCACCGTG
ATTACCGGGC ATACCAATGC GGATTTTGAC TGCCTGGCCG CCATCGTCGC CGCCGGAAAA
TTGTATCCCG ACGGCGTTTT GATTTTTCCA GGCAGCCAGG AAAAAAATCT CCGAGACTTC
TTTATCCAGA GCGCGACCTA TCTCTATAAT TTCCACAGCC TGAAAGATAT CGACCAATCC
TCGGTCCAAC GGCTAGTCCT GGTCGACACC CGGCAGAAGT CGCGGCTCAA GCATGTCCAA
TCTTTGTGGG AGCGCGAGGA TATCGAGGTC CATGTCTATG ACCACCATCC AGATACCGAG
GAAGATGTCC CGGCCACCGA ACAAACGGTC CTGAGTTGGG GCGCGACGAC TTCCATTCTT
ATTGAGCGCC TGCGCAAGCG CAATATCAGG TTGACGCCGG ATGAGGCGAC CCTTCTGGGG
CTTGGGCTGT ACGAGGACAC CGGCTGTTTC ACCTTTTCTT CGACCACTTC CCATGATCTC
AGTGCCGCGG CCTGGCTGCG GGATCAGGGC ATGGATCCCA ATTTTATCGC CGACATGGTC
CAGCGTGAAC TCAGCGCCGA ACAGGTGGCC CTGCTTAATG AACTGTTGGA TGGGGCGGTG
ACCCACGATA TCAACGGTAT CGAAGTCGTG GTCTCGCAAG TGACCACAGA AGAGTTTGTC
GGGGATTTTG CCTTACTGGT CCATAAAATG ATGGACATGC AAAATCTGCG GGTCTTTTTC
GCCCTTGGAC GCATGCAGGA CCGGATCCAT GTCGTGGCCA GGAGCCGAAC GCCGGAAGTC
AATGTGGGCC AGATCTGCGC CTCGTTCGGT GGCGGTGGCC ACCCGTATGC CGCGTCGGCC
ACGGTTAAAG ACCGGACCCT GGCCCAGGTC AAGGATGAGT TGTTCGGCCT TTTGTATTCC
CACATCAATC CCCAGATCCA GATCCGTGAC CTCATGTCCG CCCCGCCGAT CACCGTGGAC
GATCAGGCCA CCTTGCAGCA CGCCTCAGAG GTCATGACCC GTTACGGCCT CAAGGCGGTT
CCGGCCATGC GCCGGGGCAC CCGGCAGTGC GCCGGTATTC TGGAGCACCA ATTGGCCGAT
CGCGCTGTGG CGCACGGTCT GGGCCAGATG CCTGTCAGCG AATACATGGG GCGCGAATTT
GCCTCGGTCA AACCAGACAC GAGCCTGTAC CCGGCCATGG AGATCATTCT GGGACAGCGC
CAGCGCCTGG TGCCGGTGGT CGAAGACGAC CAACTCGTCG GCGTGATCAC CCGGACCGAT
CTGATCAACA CCTTGATTGC CGAACCGGCC CGGATTCCGG AATCCATGCT TCCTGAGCGG
CGCAGGGAGC GCAATATCCG CACCCTGCTG CACAACAGCC TGCCCCAGGA GGTGGTAGCC
ATGTTGACCC AGGCCGGGGA TCTGGCTCGG GATCTCGGCT ACCATGTTTA TGCCGTGGGC
GGCTTTGTCC GCGATATTCT GCTGCATCGC CGCAATCTCG ACGTGGATCT CGTGGTCGAA
GGCGACGGCA TCTATTTCGC CCGTCGTCTG GCTCTCGACC TGGGCGGGCG TGTGCGGGCG
CACAAAAAAT TCAAAACCGC GGTCATTATC CTGCCCGATG GGCAGCGCAT CGACGTGGCT
ACGGCCCGCC TGGAATACTA CGAGCATCCT GCGGCTTTGC CCACTGTGGA ATTGTCCACA
GTCAAAATGG ACCTCTCGCG GCGGGATTTC ACCGTCAATG CCCTGGCCGT GCAATTGGAT
CCGGAACAGT TCGGCAGATT GGTCGATTTT TTCGGCGGGC AGAAAGATAT CAAGGAAAAG
ACGATCCGGG TCATGCACTC GTTGAGTTTC GTCGAAGACC CGACCCGTAT TCTGCGGGCG
GTCCGCTTCG AGCAGCGTTT CCATTTCCAA CTCGGCGGCC AGACCGAGCG GCTGATCAAA
AATGCCCAGC GTCTGAACAT GATGCACAAA CTCTCAGGCA GCCGTGTTTT CGGGGAATTG
CGACTGATTC TCAATGAAAG CAAACCATTG GCCTGCCTGC AACGGCTGGA ATCGTTCAAT
ATTCTGGAGT CAATCCATCC GCTTCTCAAG CTCGATGGAA ACCGGCAGCG CATTTTGGAG
GAGACCGAAC GGGTGCTGGG GTGGTACCGG CTTTTGTACC TGGACCCGGA ACCGCGACCC
TGGCTGGTGT ATTTTCTGGG ACTTTGTTCT GGATATAACC AGTCCCAGGT CCACCTGCTG
GCCCATCGGC TGGCGTTTCC TCAGAAACGG GAAAATTTTA TCCAGCAACT GCGCCAAGAT
ATTTCCCAAT GCCGTGAACA GCTCGGTTCC TGGATGCAAA ATCACGGACA GGTCAGCGAT
CTTTTCTTTC TGCTCGAGCC GCTGCCCCTT GAAGGGGTGC TGTATTTGAT GGCTCGTGGG
TACAAAGACC CGGTTCGCCG TCATCTCTCG CTGTACTTGA CCCAATACCG GGGACAGGAG
CCTGATATCA CCGGCAAGGA CCTGCAGCAG ATGGGACTGC CCTCAGGCCC CTTGTACCGG
ACCATTTTGC AACGCGTTCT GGCGGCCAAA CTTGACGGCA AAGCCCCAGA TCGGCCGGCC
CAGCTGGAAA TGGCGGCCGG TCTCGCCCGG CAGCTTGACG ACACTCCCAG CGAAGTCCGG
ACCCGTTGA
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| Protein sequence | MTKQSPRQDQ ASDKLQAPTV ITGHTNADFD CLAAIVAAGK LYPDGVLIFP GSQEKNLRDF
FIQSATYLYN FHSLKDIDQS SVQRLVLVDT RQKSRLKHVQ SLWEREDIEV HVYDHHPDTE
EDVPATEQTV LSWGATTSIL IERLRKRNIR LTPDEATLLG LGLYEDTGCF TFSSTTSHDL
SAAAWLRDQG MDPNFIADMV QRELSAEQVA LLNELLDGAV THDINGIEVV VSQVTTEEFV
GDFALLVHKM MDMQNLRVFF ALGRMQDRIH VVARSRTPEV NVGQICASFG GGGHPYAASA
TVKDRTLAQV KDELFGLLYS HINPQIQIRD LMSAPPITVD DQATLQHASE VMTRYGLKAV
PAMRRGTRQC AGILEHQLAD RAVAHGLGQM PVSEYMGREF ASVKPDTSLY PAMEIILGQR
QRLVPVVEDD QLVGVITRTD LINTLIAEPA RIPESMLPER RRERNIRTLL HNSLPQEVVA
MLTQAGDLAR DLGYHVYAVG GFVRDILLHR RNLDVDLVVE GDGIYFARRL ALDLGGRVRA
HKKFKTAVII LPDGQRIDVA TARLEYYEHP AALPTVELST VKMDLSRRDF TVNALAVQLD
PEQFGRLVDF FGGQKDIKEK TIRVMHSLSF VEDPTRILRA VRFEQRFHFQ LGGQTERLIK
NAQRLNMMHK LSGSRVFGEL RLILNESKPL ACLQRLESFN ILESIHPLLK LDGNRQRILE
ETERVLGWYR LLYLDPEPRP WLVYFLGLCS GYNQSQVHLL AHRLAFPQKR ENFIQQLRQD
ISQCREQLGS WMQNHGQVSD LFFLLEPLPL EGVLYLMARG YKDPVRRHLS LYLTQYRGQE
PDITGKDLQQ MGLPSGPLYR TILQRVLAAK LDGKAPDRPA QLEMAAGLAR QLDDTPSEVR
TR
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