| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1170 |
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| Symbol | |
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| ID | 8418998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1375494 |
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| End bp | 1376063 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 645037745 |
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| Product | peptidase A24A prepilin type IV |
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| Protein accession | YP_003198036 |
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| Protein GI | 258405294 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000000146911 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTACTT TGCAACCTGA ATTTATTCTT CCACTCCTGC TATTTCCGGC CCTTATCTTT
GCGGCCCTTT ATGATTTGAG ATATCAGAAA ATCCCCAATC TGCTCAATTT TCCCTTAGCT
CTCTTTGCCC TCATTTACCA TACTGCATTT ACCGGACTGA ACGGTTTAGC CTTTGGCGTA
ACCGGTATGC TCCTTGGTAC TGCCCTTTTT TTGCCACCCT ACATTTTTGG TGGCATGGGC
GCTGGCGACA CCAAGCTCAT GGGCGCTATA GGCGCTGTAC TCGGGGCCAA GGGCGTATTC
GTCTCCGCAT TATTCACTGC CATCTTTGGC GGACTATATG CCGTGCTTTT GTTGCTCGTA
CATCGCGGCT ACGCTCGAAC TCTCATGCAA CGAACCTGGG AAGGCCTGAA GACCTTGGTT
TTGGTGCGTC GATACATTCC CGATTCCTCC CCCCAATCAA CGAATACAAG CCCCAGGCTC
TGTTATGGCA TTGCCATTGC CTTGGGGACA CTAACCCACG TGCTTTTACA GCATTTGGGC
ATAGATGTTT GGAACCGACT TTTTGCCTGA
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| Protein sequence | MSTLQPEFIL PLLLFPALIF AALYDLRYQK IPNLLNFPLA LFALIYHTAF TGLNGLAFGV
TGMLLGTALF LPPYIFGGMG AGDTKLMGAI GAVLGAKGVF VSALFTAIFG GLYAVLLLLV
HRGYARTLMQ RTWEGLKTLV LVRRYIPDSS PQSTNTSPRL CYGIAIALGT LTHVLLQHLG
IDVWNRLFA
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