| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1079 |
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| Symbol | |
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| ID | 8418904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1270692 |
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| End bp | 1271678 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645037651 |
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| Product | dihydrouridine synthase DuS |
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| Protein accession | YP_003197945 |
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| Protein GI | 258405203 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.224362 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.224142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAACG TTTCTGCGAC GGGGCCCTCC CCGCTCCCCT TCGGGCCCCA GGCTCCGTGG
CTGGCGCCGT TGGCCGGATT CACCGACCTG CCGTTTCGGC TCCTGTGCCG TGAAAACGGT
GCTCGTGTGG CCCACACAGA AATGATCAGC GTCAAAGGGC TGATATACAA CAGTCAGGGC
ACCTGGGACC TCCTGGCTAC CGCCCCCGCC GACACGCCCC TGGTGGTCCA ATTGTTCGGT
GCAGATCCCG ACTGTTTTGC GCAGCCGGTG CGCTGGCTCA CTGAACGGGG ATTTCACTGG
ATCGACCTCA ATGCGGGATG TCCGGTGCGC AAGGTGATCA AGACCGGGGC CGGCGCCGCG
CTTATGGAAG ACCCGCAGCG CCTTGTACGC ATCATGCAGA CCATTGGCAG GGCCGCCCCG
GTGCAGGCCG GGGTCAAACT CCGCCTCCCA GCGGACGGTA GCACAGACGG GTTACTCCGG
TTACGCGACA CTCTCGCACG TGCCGGGGTC AGTTGGATCA CCTTGCACCC GCGCACGGCC
AGACAGGGAT ATGGAGGATT GGCGCAGTGG AGTGCCTTGT CGCGAATGGC CGAGTCCAGC
CCGGTACCCA TCGTGGCCAG CGGCGATCTG TGGAACGCGC AAGCGGCCCG GCGATGCTTT
GAGCAAACCG GTGTGGATGG GATCATGTTC GCCCGTGGCG CCCTGCACAA TCCCCGGATC
TTCAAAGCTG ACCTCGCGAC TGGAGCCGAG GAAGATCCCT GTACCGACAC GGCTTCAATA
GCCGCTCTGG TTCGACGACA CGGCCAATTG TGCCGCCGCT ATGATCCCAG CCGGAGCATG
CTGCTGAAGA TGCGCTCATT TATCCCGCGC TACGTCAAGG GATTTCCCGG CGCCAAACAG
GCCCGGAAGG GAATTATCGC CTGCCAGGAT TGGGAGGCCT TTGAACAATA TGCCGATCAA
CTTGAAGAGG CCTTGGCCGG ACAATGA
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| Protein sequence | MTNVSATGPS PLPFGPQAPW LAPLAGFTDL PFRLLCRENG ARVAHTEMIS VKGLIYNSQG
TWDLLATAPA DTPLVVQLFG ADPDCFAQPV RWLTERGFHW IDLNAGCPVR KVIKTGAGAA
LMEDPQRLVR IMQTIGRAAP VQAGVKLRLP ADGSTDGLLR LRDTLARAGV SWITLHPRTA
RQGYGGLAQW SALSRMAESS PVPIVASGDL WNAQAARRCF EQTGVDGIMF ARGALHNPRI
FKADLATGAE EDPCTDTASI AALVRRHGQL CRRYDPSRSM LLKMRSFIPR YVKGFPGAKQ
ARKGIIACQD WEAFEQYADQ LEEALAGQ
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