| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0830 |
|---|
| Symbol | |
|---|
| ID | 8418648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 980806 |
|---|
| End bp | 983100 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645037398 |
|---|
| Product | cysteine synthase |
|---|
| Protein accession | YP_003197699 |
|---|
| Protein GI | 258404957 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0031] Cysteine synthase |
|---|
| TIGRFAM ID | [TIGR01136] cysteine synthases
[TIGR01138] cysteine synthase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.246504 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGCCAA CACCACCCAA TGTCCTTTCC TTGATCGGCA AGACCCCTCT GGTTCCTGTC
CATCGCCTGA ATCCCTATCC CAGTGTCTGT ATTGAGGCCA AGCTGGAAAA GCTCAATCCT
GGCGGTTCGG TCAAAGACCG CGTGGCGCTG GCCATGGTCG AGGCAGCGGA ACGCAGTGGG
CAATTGACGC CAGGCAAGAC CCTTATTGAA GCGACCTCCG GCAATACCGG AATAGGGTTG
GCCATGGTCT GTGCGGTCAA AGGGTACACC CTGCGGCTGT TGATGCCCGA ATCGGCTTCA
GAAGAGCGTC GTCGTATCCT GCGGGCCTAT GGAGCGCAAA TCCAATTGAC GCCCGGTCAC
CTCGGTACCG ATGGCGCGAT TGAAGAGGCC TATCGCATGG CCCGGGAAGA GCCCGAGTTC
TATGTCCTGA TGGACCAGTT CAACAATCCA GCGTCGATTG CCGCCCATTA TGAGACCACG
GCCCCGGAAA TCTGGGAGCA GACCGCAGGG GAGGTAACCC ATGTGGTCGT GGCTTTGGGA
ACCAGCGGGA CAGCCATGGG GCTCAGCCAG CGGCTCAAGG AATACAACCC GGCCGTGGAG
GTTGTTGGTG TGGAACCCTA TGCGGGGCAC AAGATCCAGG GCCTGAAGAA TATGCAGGAG
TCCTATCCGC CCGGAATTTA TGAGCGGAAC CAACTGGATC GTATTGTGCG GGTCGATGAC
GAACAGGCTT TTGGTTTGTG CCGGGCATTG GCTCAAAAAG AAGGCATTTT TGCCGGCCTG
AGTTCCGGTG CGGCCTTGGC AGGCGCACTG ACCCTGGCCG CTGAGATCCC CTCAGGGCGA
ATTGTTATCA TCTTTCCGGA TGGTGGAGAG CGGTACCTGA GCACTCCCGT CTTTGATCCT
CCGGCCAAGC AGGGCATGCG CCTTTTGGAC CTGCAAAGCG GTGAGAAGCG GCATATATTT
GTCCAGAAAA ACGCCCTGGG AGTCTTCACG CCCGGGCCCG GCCCCGAGGA ATTGGAGCAG
CCGGAGCTCT GGCGCCGTCT GGTCTGGGCG GACATCCTGG TTCGCTATCT CCGGCACAAG
GATTTCGAGG TGCACGGGGT GGTCGGCCTT GCAGACTGGG ATGAACACCT TTCCCATCTG
GCTGAACAGC AAGGCTGCAA TTTGCAGGAA ATGCGAGGGG CCATGCTCGA TCGGGCCGAG
GCTTTGCTGC GCCGGCTCGG GTTGGAAACT GGCTGGCATT GTCAGGCGGC AAGCCAGTGC
CGCGAGACCC AATTGGCGCT GTGCCGTGAA CTGGTCCGTA AGGGGCTGGG GTATGAAAAA
TTGCGCTCGG TCTATTATGA CGTCGGCCGT GACACCGATT ACGGGGTCTT ACGACGTACC
GATCTGGCGA AGCTCTCCCT GGGAAAAACT GTGGATCTCG ACCGCTATGC CAAAGATAAT
CCCCGGGATT TTACATTGTT GAAACGGACC AACCTCGCCG ATCTCAAGCG GGGGGATTTC
TGGAAGACAG AATGGGGCAA TGTCCGGCCG AGCTGGTATC TGCAAATGGC CGCCGCGGCC
TTGGCAGAGG GTATCGCCAT GGATGTGGTC TTGGCCGGGC GAGCCCACCA TTTTCCGCAT
ATGGAAAACC TCCGGGCTCT CTGGGCGGTT CGCAATGCCC TGCCTCAGGT CTGGCTCATG
ACCCAGGCGG TGGAAGGAGA GGCCATCGTC CCTGATATCG AAACGGCCAG CGAACGGCTC
GGCGGCATGC ATGCTTTGCG TTTGTGGTTG CTCTCTGGCG GGTATCGCAA ACCCCTGCAC
TCCTCTGAGG ACAACGCGAC CATGTGGCGC CGCAATTGGG AGAGGCTACA GGAAAGCGTG
GCTACGCTGC ATGTCGCCCG CGGCGAGGGT GGACAGGTGG ATCCGGGCTT TGAGCAGACG
CTCTACGATG TCAAGACAAT GTTCTGGGAC CAATTGGAAG ACGACTTGGA TCTCCAGCAT
TTTTGGCCTG TACTCTGGAG TTTATGCCGA ACGATCCTCA AAAAGGCCTC CCAGGGCCGA
CTGGCTCCGG TCGAGGCCGC TCGAGGCTGG AAACTTGTGA CGGATCTGGA CACGATTCTC
GGCGTGGTCG ATTGGCATAC ACTGCCCTTA CGTCAGGATC AGTGGCCTGA GGGGGTTCGG
GATCGGATCG CATTGCGCGA ACAGGCCCGG CGCGATCGGG ATTTTGCCCG GGCCGATCTC
CTGCGTCAGG AAATCGTCGC CAAAGGGTAC CGGCTTGAAG ACACCCCCCA AGGGCCGCGA
GTATTTCCGG CTTGA
|
|---|
| Protein sequence | MSPTPPNVLS LIGKTPLVPV HRLNPYPSVC IEAKLEKLNP GGSVKDRVAL AMVEAAERSG
QLTPGKTLIE ATSGNTGIGL AMVCAVKGYT LRLLMPESAS EERRRILRAY GAQIQLTPGH
LGTDGAIEEA YRMAREEPEF YVLMDQFNNP ASIAAHYETT APEIWEQTAG EVTHVVVALG
TSGTAMGLSQ RLKEYNPAVE VVGVEPYAGH KIQGLKNMQE SYPPGIYERN QLDRIVRVDD
EQAFGLCRAL AQKEGIFAGL SSGAALAGAL TLAAEIPSGR IVIIFPDGGE RYLSTPVFDP
PAKQGMRLLD LQSGEKRHIF VQKNALGVFT PGPGPEELEQ PELWRRLVWA DILVRYLRHK
DFEVHGVVGL ADWDEHLSHL AEQQGCNLQE MRGAMLDRAE ALLRRLGLET GWHCQAASQC
RETQLALCRE LVRKGLGYEK LRSVYYDVGR DTDYGVLRRT DLAKLSLGKT VDLDRYAKDN
PRDFTLLKRT NLADLKRGDF WKTEWGNVRP SWYLQMAAAA LAEGIAMDVV LAGRAHHFPH
MENLRALWAV RNALPQVWLM TQAVEGEAIV PDIETASERL GGMHALRLWL LSGGYRKPLH
SSEDNATMWR RNWERLQESV ATLHVARGEG GQVDPGFEQT LYDVKTMFWD QLEDDLDLQH
FWPVLWSLCR TILKKASQGR LAPVEAARGW KLVTDLDTIL GVVDWHTLPL RQDQWPEGVR
DRIALREQAR RDRDFARADL LRQEIVAKGY RLEDTPQGPR VFPA
|
|---|
| |