| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0612 |
|---|
| Symbol | |
|---|
| ID | 8418424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 734261 |
|---|
| End bp | 735913 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645037180 |
|---|
| Product | peptidase M20 |
|---|
| Protein accession | YP_003197487 |
|---|
| Protein GI | 258404745 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTT GTTCGTCTCA AAACAAAATA ACAGAATTTG ATATCCGCGG CTGGGTCAAA
ACAAAGCTGG AAAAACTTCC AGAATGGACG TGGGTAACAA GCTTTTTGTT AGAAATGTGC
TCTATAGATA CTTCCCTCAA AGAGGATGTC TCAGCCGTTC GACAAAATGA GGAGCGTACT
TTTCAGTGCA TTATAAGTTC ATTCAAGCCC TATGTATCTC ATTCTCACGG TATAGAGAAA
CCCGCAATAG AGTCAGCTGT CTTTTCTGAT TCCTATTATA CATGGCCTCG TTATTCCGGG
ACAGAATATA AAAATTTTGA TTATGTCTAC AACAATCGTT ATAATTTATT AATTTCTCAA
AAAAGCAACT TGCAAAAAAA ACATCGCTGG ATGCTGCACG CTCATATTGA TACCGTCCCG
CCACATATAC CGCCACAAAT AGACGGTTCC AAGGTCTTCG GGCGCGGAGC AGTAGACGAT
AAAGCCGGTA TTGCCGCCAT TGGCCTGGTT TTGCGCTGGT TACATGAATT AAGGGAATTG
GGATTCAAAG AACTCCCGCC TATAGACGCG GCATTCACCA TTGACGAGGA AGCAGGGGGC
AACGGTTCTT TGGCCCTGGC CACAAGTCTT GCTGAAACAC CGGATACAAT ACTTGTCCTG
GAGCCAACGC GGCTTCTGCC GCATCCTGCA AATCGTGGTG CGCTTTGGTT TCAGATCTCC
ATAGATCCTG AATCCCGAGT CGGGGACCAA GCCCTGGTGC TTGTTGCCGC GGAAATAATA
ATGGAAATCC AATGGCTTGG AAAAGAACTT CGCCATGAAG GTGTTCACCC ACTTTTCTGC
CCTGAACATG TGCAGACCTG CCTCGGAATT TGGGGAGACT GGGGTGATTT TCCAGCCTCG
GCCTGCAGTT TTTTTGAATT TTTGTTTGCT CCAGACAATC ACCTCAACTT GAACAAACAG
GACATTACGT CTAAATTAAA TGAAATATTG TATAATGAGG CCCAAAAAAA TGGCTTAAAA
ATCCACAAGG GCGTCGTCCG GGTCCAACCT GAAAACCAGA GTCATAGCGG ATGGTACAGG
GTGCAGGTTC AAGCGGATAG CGGCCATATG GGGTCAATGA CCAGGGACAC CGATGCTCTC
ACCAAATCCG CCTTTTTGAT CTCCGCAATC AAACAAAAAC AGTACGGCGA TATATCCTGG
ATTGGCCACT CTCCTTTGAC AATTGAAGGC GGGCAGGGAT TCACTCCCAG GCACAGTATG
CAGGAAATCC AGAACAGATT GAAAAAGGCC GTCTTCAAGG CCGCAAAACG GGCCTGCAAT
GCGTTGGGTT ATTCCGAGGA GGATATTCAA GTGCAGGTCG GATTTGATAA AATCCATAAC
GAAGCCTTTT GCAGCGACCT AGAAGCTCTT GGCACGCACT CAATGCTTAA ATCTGCCGAT
TTTTTGCTAG GCCTAGAAAA ACCTCTTCAA TCTCAGGGCT GGCAAGCGAG CTGCGATGCC
CGCATTTACG CCAGACAATG TCCGGATGTG CTGACCTTCG GCCCCGGAGC TTTGGAACAT
GCCCACAGCC CGGACGAGTT CGTTCAGGTC GAAGATATTT TCAAGGCCGC AGGCCTCATA
TTGCTGGCCA TGCTCCAAGA GGGATCGTGC TGA
|
|---|
| Protein sequence | MNSCSSQNKI TEFDIRGWVK TKLEKLPEWT WVTSFLLEMC SIDTSLKEDV SAVRQNEERT
FQCIISSFKP YVSHSHGIEK PAIESAVFSD SYYTWPRYSG TEYKNFDYVY NNRYNLLISQ
KSNLQKKHRW MLHAHIDTVP PHIPPQIDGS KVFGRGAVDD KAGIAAIGLV LRWLHELREL
GFKELPPIDA AFTIDEEAGG NGSLALATSL AETPDTILVL EPTRLLPHPA NRGALWFQIS
IDPESRVGDQ ALVLVAAEII MEIQWLGKEL RHEGVHPLFC PEHVQTCLGI WGDWGDFPAS
ACSFFEFLFA PDNHLNLNKQ DITSKLNEIL YNEAQKNGLK IHKGVVRVQP ENQSHSGWYR
VQVQADSGHM GSMTRDTDAL TKSAFLISAI KQKQYGDISW IGHSPLTIEG GQGFTPRHSM
QEIQNRLKKA VFKAAKRACN ALGYSEEDIQ VQVGFDKIHN EAFCSDLEAL GTHSMLKSAD
FLLGLEKPLQ SQGWQASCDA RIYARQCPDV LTFGPGALEH AHSPDEFVQV EDIFKAAGLI
LLAMLQEGSC
|
|---|
| |