| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0571 |
|---|
| Symbol | |
|---|
| ID | 8418383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 695423 |
|---|
| End bp | 696151 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 645037139 |
|---|
| Product | Flagellar assembly protein FliH/Type III secretion system HrpE |
|---|
| Protein accession | YP_003197446 |
|---|
| Protein GI | 258404704 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCTAGAA TTCTTCGCGG AAGTGAATAT CAGGCCCAGC CCCTGCAACT ACGGGATTTG
GATGCCTTGC CGGACGAGAC GGAGGAAGGA ATTTTCGAAG CTGCAGCGAT GCCACAGCAG
GAAAGGAAGT TTCCCTCTGA TACGACTTCT TTTCGTGGAG AAAGCGGGCC CACTGAGGAA
TCGAAGTCGG AAACAGAATC TGGGGGCGAA AAATCTCTTC TTGCAGTGGA TGTTGAGGCC
GAGCGTCAGG AGGCCTATGA AATCGGGCTG GCTCATGGCC GGGAAGAGGC ACACAATGAA
CTCCATAGCG CCACTCAATT CTTGTTGGAT GCGGCCAAGA AATTCGATGG ATTGCGCACT
ACTCTCTATG AACGTCAGAA AGACGATCTG ATCAGTTTGG CCTTGGTCAT CGCGAAGCAG
GTCATTGGAC AGGAATTGCA GACAAACGAA GAGGTGATTG TCGGAGTGGT CGAAAACGCG
TTGAAGTCCG CCTTGGAGAC AGACTCGCAT CATATTCGAG TCCATCCCGA CGATCTCGCA
GTGGTCCAGG AACACAGGCC GCTTTTTCTG GCCAATGTCC ACGGCCTCAA GGAGATTTCT
GTGGAGGCCG ACAAAAATGT CAGCCGCGGG GGGTGCGTTA TCGAATCGGA TATGGGCGAA
GTCGATGCCT CGGTGGAAAC CCGTTTGGCT GGCATAGAAG CCCAACTGCA AGGGGCGGTA
CGGCAATGA
|
|---|
| Protein sequence | MSRILRGSEY QAQPLQLRDL DALPDETEEG IFEAAAMPQQ ERKFPSDTTS FRGESGPTEE
SKSETESGGE KSLLAVDVEA ERQEAYEIGL AHGREEAHNE LHSATQFLLD AAKKFDGLRT
TLYERQKDDL ISLALVIAKQ VIGQELQTNE EVIVGVVENA LKSALETDSH HIRVHPDDLA
VVQEHRPLFL ANVHGLKEIS VEADKNVSRG GCVIESDMGE VDASVETRLA GIEAQLQGAV
RQ
|
|---|
| |