| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0125 |
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| Symbol | trpA |
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| ID | 8417929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 164400 |
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| End bp | 165167 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036690 |
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| Product | tryptophan synthase subunit alpha |
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| Protein accession | YP_003197005 |
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| Protein GI | 258404263 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0159] Tryptophan synthase alpha chain |
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| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATACAT CAGTGTTGAC CGAGGCCGTT GACAAGGCTC ACAAGGCCGG GCGCCACGCC
CTGATCCCGT TTCTTCCGGC CGGATTTCCC GACCCGGAAC GGTTTTGGGA GGTTTTGCGG
GAGCTGGACG CGCAAGGTGC AGATATTATT GAGATAGGAG TCCCGTTTTC CGATCCCGTG
GCCGATGGTC CACTTATTGA GGCCGTTTCG TTGCAGTGCC TGGCCGACGG CGTTGATCTG
GACTGGATAT TGGACGGATT GGAGCGTATG GCGGGGCAAT TGGCGACCCC GATCGTGTGT
ATGGGGTATT ATAATCCCTT TTGGCAATAC GGCATGGCCC GTTTTGCGGA GCGAGCCGCC
CAGGCGGGGG TGGCCGGGTG CATTGTCCCG GATCTGCCGC TGGAGGAGGC CGGGCCGTTT
CAAGAGGTAC TCAATGCACA AGGAATGGAC CTCATCCGCA TGATCGGCGT GAATACCTCT
GAAGAGCGGA TGCGAGCCTA TGCCAAAAAT GGCAGCGGTT TTGTGTATAT GGTTGCGGCA
CTGGGCATCA CTGGCACACA AGCCGGGTTC CCGCCGCAAT TGCCTCAGGC GCTTTCCCGT
GCCCAGGACA TTTTTGACGA TCCCATTGCT CTGGGGTTCG GATTGGAGCG TAAGGAACAA
CTGGGTGAGA TACGCGACCT GGTCGATGCG GTGGTCTTCG GCAGCAGTTT GATCCGGCAT
GTGCAAGGCG GCGGGGAGGT CAGGACATTT TTGCAGAGAT GGCACTGA
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| Protein sequence | MHTSVLTEAV DKAHKAGRHA LIPFLPAGFP DPERFWEVLR ELDAQGADII EIGVPFSDPV
ADGPLIEAVS LQCLADGVDL DWILDGLERM AGQLATPIVC MGYYNPFWQY GMARFAERAA
QAGVAGCIVP DLPLEEAGPF QEVLNAQGMD LIRMIGVNTS EERMRAYAKN GSGFVYMVAA
LGITGTQAGF PPQLPQALSR AQDIFDDPIA LGFGLERKEQ LGEIRDLVDA VVFGSSLIRH
VQGGGEVRTF LQRWH
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