| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_2356 |
|---|
| Symbol | |
|---|
| ID | 8425885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013205 |
|---|
| Strand | - |
|---|
| Start bp | 2420389 |
|---|
| End bp | 2423367 |
|---|
| Gene Length | 2979 bp |
|---|
| Protein Length | 992 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 645028475 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_003185752 |
|---|
| Protein GI | 258512318 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACTTTG TGCACCTGCA CGTGCATTCC GCGTTTTCGT TTCGCGAGAG CCTGTTGCGC
GTGGAGGACA TCGTACGGGC CGCCAAGGCC TGCGAGATGC CGGCCGTGGC CATCACGGAC
ACCAACGCGA TGTACGGCGC GCTCAGCTTC TACCGCCTCG CGCGCGCGGA AGGGATTTCC
CCCATCCTCG GCATGCAGGT GTCGCTCGCC GTCGGCGAGG AGGAGGCCGC GCCCGGGCGG
GCGGCCGAAT GGCTCGATAC CGTGGTGGTG CTCGCGATGG GCATGGAGGG GTATCGCCGG
CTCACGCGGC TCGCGACGAG CGCGCGCTGG AAGCGGCCGG TGCCGCACGT GACCCTCCGC
GAACTCGCCG AGAGTTCGGA TGGGCTGGTG GTGCTCTGTG GCGGGCCGGA GTCGCGCCTG
TTTGACTTCC TCGCCCGGGG CGAGGCGGAG GCGGCCGAGC GGCGGCTTTT GCAGGTGGCA
GGCGCCGTGC CCGTGGGCCA GTTGTTCGTC GAAGTGCAGG ATCACGGCCT TCGGCGGGAG
CGCGAGGGGC TGCCTTCGCT CATTCAGTTG GCCAAGCGTT ATGATGTGCC GCTTGTGGCG
ACGCACGATG TCCGCTATCT CGCGCGTGAG GACGCGTCGT GGCATCGCGC GTACGCGCAG
CTCGCGCGGG CCGATGCAGC CGAGCGGTTC GCGACGGACG AGTTTCACTT CGCGACGAAG
GCGGAGATGG CGGACCGGTT TGCCAACTTG CCGGAGGCCC TCGGGCGGAC GGCCGAGATC
GCGGAGATGT GCGCGCTCGA CCTGCCGCTT CATCAGGTGC GGATGCCGCG CTACGCGACG
AAGGACGGCC GGCCGGCGGA CGAGGTGCTG CGCGAGGCTG CGCGCGCGGG CGCCGCGAGG
CGGTACGGCG CGCTCTCGCC CGAGGTGGAG GAGCGGCTCG AGCGCGAGCT CGACGTCATC
TGCCGCATGG GGTACGCCGA TTACTTTCTC GTGGTGGCGG ACTTCATTCG GCACGCGCAC
CAACAGGGCA TTTCCACGGG CCCGGGCCGC GGATCGGCGG CGGGCAGCCT GGTCGCGTAC
GCGCTTCGCA TCACGGATGT GGATCCCATT CGGCACAAGC TTCTGTTCGA GCGGTTCCTG
AACCCCGCGC GCGTGTCGCT GCCGGACATC GACACGGACT TCGAGTTCGA GCGGCGCGGC
GAGGTCATCC GCTACGTGAT CGAGAAGTAC GGGCGCGATC GCGTCGCTCA GATCGGCACG
TTTGGCACGC TGCAGGCCCG GGCGGCCTTG CGGGACGCGG GCCGCATGAC GGGGGCGGAT
CCGGCGCTCG TCGACCGCTT GGCGAAGCTC GTGCCGGGCG TGGTGCACGC GTCGCTCGAC
GGCGCGTATC AGGAGTCCGC GGCGTTCCGG GAGCTCGTCG ACGGCAGTCC GGACGCCAGG
CGGCTGTTTG AGGCGGCCAA GCGGATTGAG GATCTGCCGC ACCACACGTC CATTCACGCG
GCGGGCGTCA TCATCTCGCC CGAGCCTATC GCGGACTGGA TTCCGCTCGA TCTCGCCGCG
GACGACACGC CGGTCACGGC GTATCCCATG GAGGATGTCG AGGCGCTCGG GTTCGTCAAG
ATGGATTTTC TCGGCCTCAA GACGCTGACG CTCATCGATC GCTGCCTCGA CTCGATTCGC
AAACGCACGG GCGTGACCAT CGATTGGCGG CAGGTGGACG AGGGCGACAA GGCCACGTAC
GCCCTGTTGA CCCGCGCCGA CACGAACGGC GTCTTTCAGC TGGAGTCGGC CGGCATGCGG
CGCGTGCTGC GGGAGCTTCG CCCCACCAGC TTGGACGACG TGATCGCCGT CATCTCGCTC
AACCGCCCGG GGCCGATGGA GAACATCCCC GCCTTCTGCG ACGCGAAACA TGGACGGCGC
CCCGTCACGT ATCCGCATCC GGATCTCGAG CCCATTCTGG CGGACACCTA CGGGGTCATC
GTGTATCAGG AGCAAATCAT GCAGATTGCG AGCCGGATGG CGGGGTTTTC CCTGGCCGAG
GCGGATCTGT TGCGGCGGGC CGTGTCAAAG AAGAAGCGCG AGATCCTGGA CGAGGAGCGC
GCTCGCTTTG TCGACGGGTG CGTGCGGCGC GGGTACAGCG AGGAGACGGC GCGCGAGGTG
TATGATCTCA TCGTGCGCTT CGCGGATTAC GGGTTCAATC GCTCGCACGC GGCGGCGTAC
GCGGTGCTCG CGTTTCGAAC TGCGTATCTG CGGGCGCACT TTCTGCCGGA TTTTTTGGCG
GCGCTCCTCA CGCTCTCGAT GGGGGCACCG GACAAGATTC GGCTGTACGA GCAGGACGCG
AGGCGCCACG GCATCCAGGT GAGGCCCCCG TCTGTCCTGC GGAGCGAGCG GGGGTACACC
GTGGAAGAGG ACGGGAGCCT GCGCGCGGGC CTCATCTCCA TTCGAAACGT CGGGGAGGCG
GCGGTCGATC ACATCCTGTC CCTAAGGTCC GAGAAGCCGT TTGCGTCTCT GGTCGATTTC
CTGCGGCGCA TCGAGCCCCG CATCGTCAAT CGCAAGGCGC TCGACAGCCT CTTTGCGGCG
GGGGCGCTCG ACGAGTTTTT CCCGGAGAAC GCCTCGCGGG ACGTGCGCCG CCAGATGTAC
GAGGAGGCGC TGTTGCGCGC GGAGGAGAGC CGGCAGTGGG CGGCGCTCGA CCTGTTCGTC
GAGGCGGAGG CGAAGAGCGC TTCCGAGGCA AGCGGGGGTG CGTCGGCCAC ATCCGCCAAG
CGCCTGTACA TCCGGTACCG CAGCCGGGGC GGCGCACAGG TGTTGCGCGA GATCCAGCGA
CTGCTCGCGA TGTCTCCCGG GGAGACGGAG GTCGCGCTCT ACGACGCCTC CACGGGGCGG
GCGCGGCTGC TCGGCTCGCG CTATCGCGTG GAGGTGACGC AGGATTTGGT GGCCGCGCTC
GAAGAGCGCG TGGGGCTTGG CAACGTTCGG CTGAAGTGA
|
|---|
| Protein sequence | MDFVHLHVHS AFSFRESLLR VEDIVRAAKA CEMPAVAITD TNAMYGALSF YRLARAEGIS
PILGMQVSLA VGEEEAAPGR AAEWLDTVVV LAMGMEGYRR LTRLATSARW KRPVPHVTLR
ELAESSDGLV VLCGGPESRL FDFLARGEAE AAERRLLQVA GAVPVGQLFV EVQDHGLRRE
REGLPSLIQL AKRYDVPLVA THDVRYLARE DASWHRAYAQ LARADAAERF ATDEFHFATK
AEMADRFANL PEALGRTAEI AEMCALDLPL HQVRMPRYAT KDGRPADEVL REAARAGAAR
RYGALSPEVE ERLERELDVI CRMGYADYFL VVADFIRHAH QQGISTGPGR GSAAGSLVAY
ALRITDVDPI RHKLLFERFL NPARVSLPDI DTDFEFERRG EVIRYVIEKY GRDRVAQIGT
FGTLQARAAL RDAGRMTGAD PALVDRLAKL VPGVVHASLD GAYQESAAFR ELVDGSPDAR
RLFEAAKRIE DLPHHTSIHA AGVIISPEPI ADWIPLDLAA DDTPVTAYPM EDVEALGFVK
MDFLGLKTLT LIDRCLDSIR KRTGVTIDWR QVDEGDKATY ALLTRADTNG VFQLESAGMR
RVLRELRPTS LDDVIAVISL NRPGPMENIP AFCDAKHGRR PVTYPHPDLE PILADTYGVI
VYQEQIMQIA SRMAGFSLAE ADLLRRAVSK KKREILDEER ARFVDGCVRR GYSEETAREV
YDLIVRFADY GFNRSHAAAY AVLAFRTAYL RAHFLPDFLA ALLTLSMGAP DKIRLYEQDA
RRHGIQVRPP SVLRSERGYT VEEDGSLRAG LISIRNVGEA AVDHILSLRS EKPFASLVDF
LRRIEPRIVN RKALDSLFAA GALDEFFPEN ASRDVRRQMY EEALLRAEES RQWAALDLFV
EAEAKSASEA SGGASATSAK RLYIRYRSRG GAQVLREIQR LLAMSPGETE VALYDASTGR
ARLLGSRYRV EVTQDLVAAL EERVGLGNVR LK
|
|---|
| |