| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_1993 |
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| Symbol | |
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| ID | 8416304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Eggerthella lenta DSM 2243 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013204 |
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| Strand | - |
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| Start bp | 2335997 |
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| End bp | 2338102 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 645024970 |
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| Product | VacB and RNase II family 3'-5' exoribonuclease |
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| Protein accession | YP_003182346 |
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| Protein GI | 257791740 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.13462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.124011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGCGGA CGCGTTCCCA TACGCGCCGG CATCCCCGTA GCAACCCGCG GGGCGTGCTG
AGCGTGCGCG GAGGCGGCTT CGGCTTCGTG CAGACGGCGG AGGGCGAGTT CTTCGTTCCG
GAATCCAAGA TGGCGGGTGC GTTCGACGGC GATCTCGTGG AAGTGGCGCC GCTGCCCGTG
CAGAGCGGCC GCAAGAAGCA GCCACATGAA CGCAAAGCAG ATCTTCGCGC AGGAGAGAAG
CCGGCGGCGC GCGTGCTGCG GGTCGTCGAC CGTGCGCACG ACACGCTCGT GGGGCGCTAC
GAGGTGGCCG AACCTTTCGG CGTGGTCGTG CCCGAAGATG CGAACATCCC CTATGACATA
TTCACCATGC GTGCCGACCG GCCCGACATC GAAGACGGAT CGCTCGTGCG CGTGCGCATC
ACGACGTTTC CTTCGCGCAA CACGGCGGCC ACCGGCGTTA TCGAGGAGGT GCTCGGGCTC
GCCGACGACG AGCACGCGGC CGTAGACGTG GTGATCGCCC GTCACAAGCT GGAGACGGTG
TTCTCCGAAG GGGCGCTTTC GGAGGCGCGA AGCGCGGTGC TCGACGAGGA CGGCGCGTTG
GCGTCGGGGT ACCGCGACTT GAGGGAGCGT TTCACGTTCA CCATCGATCC GGCCGATGCG
AGGGACTTCG ACGATGCGGT CAGCCTGGAG CCCGTTTCGA CCTGCGGGGT TGGAACCGGC
ATCCGCGTGG TGGACGAGCG CGGGCTCGGG GTGGCGCGTT GGCGGTTGGG CGTGCATATC
GCCGACGTGG CGCACTACGT GCCGTGGAAT TCCTCGCTCG ACCTCGATGC GCGCAGGCGG
GCGACCAGCG TGTACCTCGT CGACCGTGTG ATTCCCATGC TGCCCGACGA GTTGTCGGGC
GATCTGTGCT CGCTCAAGCC CGACGAAGTG CGTCGTACGA TGACGGCCGA CCTCTACCTC
GACGATCGGG CGCGGCTCGT GGCCTACGAT CTGTATCCGG CGCTCATCCG CTCGCATGCG
CGCCTGTCGT ACGAGGAAGC GCAGGCGCTG CTGGACCGTT GTCATCCTGA GCGGAGCGCC
GAAGGCGCGG AGTCGAAGGA TCTCGTGCGG CGCGACGGCG CTTGCGCGCC GGGCGACGGG
CTTTCCGACC GCCTCGCCGC GCTGTCGCGC CTGGCGAAGC AGCGGTTCGC CTCCCGCGAG
AGGGCGGGCG GCCTCGACTT CGACTCGGTC GAGGCGCGCG TGGTTCTCGA TGAGGAGGGG
AGTCCGACGG GTATCGACTT GCGCGTCAAG ACCGACGCGA CCTCGCTCAT CGAAGAGGCC
ATGATCCTTG CGAACGAGAC CGTCGCCAAG CACCTGCGCG ATGCGAAGTT CCCCAGCCTG
TACCGCGTCC ACGAGCAGCC TTCGGCCGAC AGCTTGGCGG CGCTCGTGCC CGTGTTCCAG
GACTTCGCGT GGTTCCGCGA CATCGATCAA GCCGACTTCA TCGCGGGCGA TGCGCACGTC
GTCCAGCGCG TGCTGGAGGC GAGCGCGGAG CGTCCCGAGG GCGAGCTCGT GTCGACGCTC
CTGCTGCGGT CGATGAAGCG GGCGGTGTAC CGTCCCGACT GCGCTGCGCA CTACGGCCTG
GCCAGCGGGG CCTACACGCA TTTCACGTCT CCCATCAGGC GCTATCCCGA CCTTGTGGTG
CATCGTATGC TCAAGGCCCT CATCGGCGGA CGCCCGGAGA AGTTCGACCA GGAAAAATCG
GCGCTGCCAT GGATCGCCGA GCACTCCTCC GACATGGAGC GCATAGCCGA GAAGGCTGCG
CGCGAGTCGC AGGAGGTCAA GCTCATCGAG TATCTCGAGC GGTTCGTGGG GCAGACGTTC
TCGGCGACGG TGTCGGGGGT GGCGACGTAC GGCGCGTACG TGCGCCTCGA CAACACGGCC
GAAGGTTTGA TCCCGTGCAA GAACCTTGGT TCGGAGTACT TCGCGCTCGA TCCTGTGCAG
CATCGTCTGA CCGGGCAGGA CACGGGCGCG TCGTATCGCC TGGCGCAGCG GCTCGCCGTC
GTGCTCGTCT CTGCCGATCC GCGTGCTCGG CGCTTGGACT TTCGTCCTGC CCGCGACGAG
CGATAG
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| Protein sequence | MGRTRSHTRR HPRSNPRGVL SVRGGGFGFV QTAEGEFFVP ESKMAGAFDG DLVEVAPLPV
QSGRKKQPHE RKADLRAGEK PAARVLRVVD RAHDTLVGRY EVAEPFGVVV PEDANIPYDI
FTMRADRPDI EDGSLVRVRI TTFPSRNTAA TGVIEEVLGL ADDEHAAVDV VIARHKLETV
FSEGALSEAR SAVLDEDGAL ASGYRDLRER FTFTIDPADA RDFDDAVSLE PVSTCGVGTG
IRVVDERGLG VARWRLGVHI ADVAHYVPWN SSLDLDARRR ATSVYLVDRV IPMLPDELSG
DLCSLKPDEV RRTMTADLYL DDRARLVAYD LYPALIRSHA RLSYEEAQAL LDRCHPERSA
EGAESKDLVR RDGACAPGDG LSDRLAALSR LAKQRFASRE RAGGLDFDSV EARVVLDEEG
SPTGIDLRVK TDATSLIEEA MILANETVAK HLRDAKFPSL YRVHEQPSAD SLAALVPVFQ
DFAWFRDIDQ ADFIAGDAHV VQRVLEASAE RPEGELVSTL LLRSMKRAVY RPDCAAHYGL
ASGAYTHFTS PIRRYPDLVV HRMLKALIGG RPEKFDQEKS ALPWIAEHSS DMERIAEKAA
RESQEVKLIE YLERFVGQTF SATVSGVATY GAYVRLDNTA EGLIPCKNLG SEYFALDPVQ
HRLTGQDTGA SYRLAQRLAV VLVSADPRAR RLDFRPARDE R
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