| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1351 |
|---|
| Symbol | |
|---|
| ID | 8414240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1522831 |
|---|
| End bp | 1524177 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 645022952 |
|---|
| Product | adenylosuccinate lyase |
|---|
| Protein accession | YP_003180366 |
|---|
| Protein GI | 257785149 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0015] Adenylosuccinate lyase |
|---|
| TIGRFAM ID | [TIGR00928] adenylosuccinate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0804314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.668608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAGATC GCTACACCGG CAAAGAAATG GGCCACATCT TTTCTTTGGA GAACAAGTAC
GCCGTTTGGC AGGAGATTGA AGTTCTTGCG TGCGAAGCAC AGGCTGAGCT TGGTGTTATT
GGTATTTCTC GCGAAGAGGC AGCTTGGATT CGTGAGCACG CTGCGTTTAA CCGCGCTGAA
GTAGACGAGA TTGAGGCTGT TACTAACCAT GATGTTATTG CTTTTTTAAC TAACATGGGC
TCCTACATTG ATGCTGAGGT TCCTGAGGGC AAGCTCAAAC CAAGTCGTTG GGTTCACTAC
GGTATGACCT CAACAGATCT GGGAGATACT GCTCTTTGCT ACCAGCTCAC TCAGGCATGT
GACCTACTCA TTGCTGCGGT TCGTCGCTGC GCTGCCATCT GCAAACGCCG TGCTTTTGAG
GAGCGCGATA CCCTTTGCGT TGGTCGTACT CATGGCATTC ATGCAGAGCC TATGACCTTT
GGTATGAAGT TTGGCAGTTG GGCTTGGGAG TTCAAGCGCG ATCTTGATCG TCTAAAGGAT
GCTCGTAAAA ACGTTGCTTA TGGCGCTATT TCTGGCGCTG TTGGAACTTA TTCTTCCATT
GATCCTTTTG TTGAGGAGTA CGTTTGCGAG AAACTCGGTC TTGTTCACGA CCCTCTTTCA
ACCCAGGTAA TTTCTCGTGA CCATCATGCT TACCTTGCTG GTGTTCTGGC AACTGTTGCC
GCTACTTGCG AGCGCGTTGC AACCGAGATG CGTGCATTAC AAAAGACCGA TACCCTCGAG
GCTGAAGAGC CATTCCGCAA GGGACAGAAG GGTTCTTCCG CTATGCCCCA CAAGCGCAAT
CCTATTACTG CTGAGAAAAT CTGTGGTTTG TCCCGCGTGG TCAAAGCCAA TGCACAGGTT
GCCTTTGATA ACGTTGCTCT TTGGCATGAA CGTGATATTA GTCATTCTTC TGCTGAGCGT
GTTGCTCAAG CAGACAGCTT TATTGCTCTT GACCATATGT TGTCAAAGCT TGAGTTTTTG
CTTGATGGCA TGGTTCTATA TCCAGAGCAG ATGATGGCCA ATCTTAATAA GACACGCGGC
ATGCTCTTCT CGTCAAAGGT TCTTCTTGCT TTGGTTAATA CTGGTATTAC TCGTGAAGAG
GCATACAAGA TTGTCCAGTC TAACGCTATG AAGGTGTGGG CAGATATTCA GCAGTGCAAG
GAAGGACCAT CTTATCAGGG GCTTCTTGAG GCAGACCCAG CTTGTACGCT GAGCCATGAT
GAGCTTGAGA AGATCTTTGA TCCTCGTGCG TTCCTCACTC GTTCACACGT TTTATTTGAC
CGTCTTGAAC ATCTTGAATT GGACTAA
|
|---|
| Protein sequence | MVDRYTGKEM GHIFSLENKY AVWQEIEVLA CEAQAELGVI GISREEAAWI REHAAFNRAE
VDEIEAVTNH DVIAFLTNMG SYIDAEVPEG KLKPSRWVHY GMTSTDLGDT ALCYQLTQAC
DLLIAAVRRC AAICKRRAFE ERDTLCVGRT HGIHAEPMTF GMKFGSWAWE FKRDLDRLKD
ARKNVAYGAI SGAVGTYSSI DPFVEEYVCE KLGLVHDPLS TQVISRDHHA YLAGVLATVA
ATCERVATEM RALQKTDTLE AEEPFRKGQK GSSAMPHKRN PITAEKICGL SRVVKANAQV
AFDNVALWHE RDISHSSAER VAQADSFIAL DHMLSKLEFL LDGMVLYPEQ MMANLNKTRG
MLFSSKVLLA LVNTGITREE AYKIVQSNAM KVWADIQQCK EGPSYQGLLE ADPACTLSHD
ELEKIFDPRA FLTRSHVLFD RLEHLELD
|
|---|
| |