| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1290 |
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| Symbol | |
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| ID | 8414170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1447340 |
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| End bp | 1450090 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022882 |
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| Product | preprotein translocase, SecA subunit |
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| Protein accession | YP_003180305 |
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| Protein GI | 257785088 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.793107 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAATT TCCTCTCTAA GATTCTGTCT TTTGGTGCTG ACAAGGACCT TAAGGCATAT
CAACGTATTG TCGAGAAGAT CAATGCGCTT GAGCCAACAA TGCAAGCAAT GAGTGATGAA
GAGCTCCAAT CTCAGACTGA TAAGTTTAAG GCTCGTTATG CTGAAGGAGA AAGTCTGGAT
GATCTTCTTC CAGAGGCTTT TGCAACGGTG CGTGAGGCAT CGGTAAGAAC TATTGGTCAG
CGTCACTTTG ATGTTCAGCT TATCGGTGGT ATTGCACTTC ATAAGGGTAC TATTGCAGAG
ATGAAGACCG GTGAAGGCAA GACGCTTGTT TCTACTCTGG CTGGTTACCT TAACGCACTG
AGCGGCGAGG GCGTTCACAT TGTTACTGTT AACGATTACC TAGCTAAACG AGACAGTGAG
TGGATGGGTA CCATCTACAA GTTCTTAGGC ATTACCGTCG GTCTTCTGCA AAACGGTATG
CGTTTGAGCC TTAAAAAGCC TGCGTATGAG GCAGATATTA CTTATGGCAC AAATTCAGAG
TTTGGCTTTG ACTACCTACG CGATAACATG GTTACTCGCC CAGAGATGCG CGTCCAGCGT
GGTCATCATT ACGCCATCGT CGACGAGGTT GACTCCATCC TTATCGATGA GGCTCGTACT
CCTCTGATTA TTTCTGGTGC TGGCACTAAA TCTGCTGGTA CATATAAAGA TTTTGCTAAG
GCAGTTCGCG GTTTAATTCC AGACGTTGAC TTTGAGATGG ATGAGGCAAA GCACACTATC
GCAACAACTG AGATTGGTCT CGAGAAGGTC GAGCGTGCTC TCAACATCGA CGATATCTAT
AACGATGAGT CTGGTCAGCT AGTTAATCAT CTTCAGCAGG CGCTGAAGGC TGAGTATATG
TTCCATCGTG ACCAGCAGTA TGTTGTCATT GACGGTGAAG TTAAGATTGT TGATGAGTTT
ACTGGTCGCA TTATGGAAGG TCGTCGTTAT TCTGAAGGTC TTCATCAGGC AATTGAAGCA
AAAGAAAATG TGCAAGTGAG GGAAGAGAAT CAGACTCTGG CAACTATTAC TCTCCAGAAC
TACTTCCTTA TGTATGACAA GCTTTCTGGT ATGACCGGTA CCGCAATGAC TGAGGATGCA
GAGTTCCGCG AGGTTTATCA CGTTCCTGTT CAGGTTATTC CACCTAACCG CCCTGTTAAG
CGCGAGGATC TTGATGACCT TGTTTATCGT ACTATTGACG CTAAATTTGA AGCTGTTGTC
AAAGATGTTG AAGAGCGTCA CCAAAACGGT CAACCAGTAC TTGTTGGTAC CGTTTCAATT
GACAACTCTG AGCGTATTTC TCGTATTCTT TCAAAGCGCG GTATTAAGCA TAATGTTCTG
AACGCTAAGT TCCATGAGCG TGAGGCACAG ATTATTGCTC AAGCCGGTCG CAAGGGTGCT
GTTACCATCG CAACTAACAT GGCAGGTCGT GGTACAGATA TTCTTCTGGG CGGAAATCCA
GATGTTATGG CAGAAGATAT CCTTCGTAAT CAGGGAATTG AGCCAGCTGA GGCCACTCAG
GAGCAAAAAG AAACTGCTCA CAAAGAAGCT AAGGAAATCT GTGCTGCTGA GCGTGAGGCA
GTAACCGATG CAGGCGGTTT GTGCGTTATT GGTACTGAGC GCCATGAGAG CCGTCGTATT
GATAACCAGC TTCGTGGTCG TTCTGGTCGT CAGGGAGATC CTGGTCAGAC CCAGTTTTAT
CTATCCTTGG AAGATGACCT AATGCGTCGC TTTGGTGGAG ATCGTATGGA CGGCGTTGCG
GCAATGATGC AGCGCTATGA GCTTCCTGAC GATATGCCAA TCAAGGCAAG GATTGTTACT
AAGCTCGTTG AAGGCGCTCA GCGCAAGGTT GAGGAAGTCA ACTTTGCAAT GCGTAAGAAC
GTCCTTGATT ACGACGATGT TATGAATAAG CAGCGCCAGG TTATTTATGC AGAGAGAAAC
AAGATTCTTG ATGGCAAGGA TCTTATGGGA CTCATTGAAA CGGTTACTGC TTCCACTACT
CAGCGTGTTT GCGAGGAGTT TTGCTACGGA GATGCTGATG AGTGGGATCT TGAGGGTCTT
GAGAAATGGC TTTCTGAGCT TACTGGTAAG ACTGACCTTC CAGAGTTTTC CGAGGATACT
AAGTTTGAGC AGCTTGAAGG GGATGTCACC GCATTCGTTC AAAAAACCTT TGACGAGAAA
ACCCAGAAGC TCGGTGAAGA AGTTATGCGA GAGCTTGCTG CTCAGGTAAT GCTTCGCGTT
ATTGATACTC GTTGGATGGC ATACCTTCAG GAGATGGATT ACTTGAAGAC GGGTATTGGT
CTTCGCGGTT TTGGCCAGCG TGATCCTTTA GTTGAGTATA AGACTGAGGC ATATGAAGCG
TTTACACTGC TTGTAAATAC CATGTATGAG GACTTCCTTC GTACTATTCT TCGTCTTGAG
TTGGTTAATC GTCCACGTCA GAATACTGAG ACAGAGGCAT TCCAAAATGC TCAATATTCT
GGTGGAGAAG AGACTGACGG TGATCAAAAG GCGTTTAAGC AAGGTAAGAG CATGCTTAAG
AATGCAGCAG CCATTGGCAA GAGCCCACAG GGAACCGGCG CCAGCCAGTC TTCTGTGTCT
ACTTACCGTA AGTCTGACGA TCCAAATCCT TACGTTAATG TTGGTCGTAA TGATCCTTGC
CCATGTGGAA GTGGCAAAAA GTTTAAGAAC TGCCACGGCC GAAACAGGTA A
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| Protein sequence | MPNFLSKILS FGADKDLKAY QRIVEKINAL EPTMQAMSDE ELQSQTDKFK ARYAEGESLD
DLLPEAFATV REASVRTIGQ RHFDVQLIGG IALHKGTIAE MKTGEGKTLV STLAGYLNAL
SGEGVHIVTV NDYLAKRDSE WMGTIYKFLG ITVGLLQNGM RLSLKKPAYE ADITYGTNSE
FGFDYLRDNM VTRPEMRVQR GHHYAIVDEV DSILIDEART PLIISGAGTK SAGTYKDFAK
AVRGLIPDVD FEMDEAKHTI ATTEIGLEKV ERALNIDDIY NDESGQLVNH LQQALKAEYM
FHRDQQYVVI DGEVKIVDEF TGRIMEGRRY SEGLHQAIEA KENVQVREEN QTLATITLQN
YFLMYDKLSG MTGTAMTEDA EFREVYHVPV QVIPPNRPVK REDLDDLVYR TIDAKFEAVV
KDVEERHQNG QPVLVGTVSI DNSERISRIL SKRGIKHNVL NAKFHEREAQ IIAQAGRKGA
VTIATNMAGR GTDILLGGNP DVMAEDILRN QGIEPAEATQ EQKETAHKEA KEICAAEREA
VTDAGGLCVI GTERHESRRI DNQLRGRSGR QGDPGQTQFY LSLEDDLMRR FGGDRMDGVA
AMMQRYELPD DMPIKARIVT KLVEGAQRKV EEVNFAMRKN VLDYDDVMNK QRQVIYAERN
KILDGKDLMG LIETVTASTT QRVCEEFCYG DADEWDLEGL EKWLSELTGK TDLPEFSEDT
KFEQLEGDVT AFVQKTFDEK TQKLGEEVMR ELAAQVMLRV IDTRWMAYLQ EMDYLKTGIG
LRGFGQRDPL VEYKTEAYEA FTLLVNTMYE DFLRTILRLE LVNRPRQNTE TEAFQNAQYS
GGEETDGDQK AFKQGKSMLK NAAAIGKSPQ GTGASQSSVS TYRKSDDPNP YVNVGRNDPC
PCGSGKKFKN CHGRNR
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