| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1274 |
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| Symbol | |
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| ID | 8414154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1429888 |
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| End bp | 1431900 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 645022866 |
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| Product | VacB and RNase II family 3'-5' exoribonuclease |
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| Protein accession | YP_003180289 |
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| Protein GI | 257785072 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTAGAA AACGCATACA TAAAGGAAAT CGCCGTCAGG GACGTGCAAA AGTCTCAAAG
CGACCATCAA CGCTGCTTAC AGGTACGTTG AGCCTTTCTC GCCCAGGAGT TGCTACCGTA
AGCACCCCTG AGGGAATGTA TGCGCTGGCA AAGCACGGTA TTCATGAAGC TATGCACGGA
GATGAGGTTC AGGTTTCGCT TGTCTCGGCA AAGGGAAAGG CTCCTCTGGC AAACGTGCGC
TTTGTGCTTA CGCGTGCTAC TCAGACGTTT TTGGGCATCT ACCATGACGC CGGACCACTT
GGCGCCGTGG TGCCGCTGGA TAGTCGCATT CAGCGAGATT TCTTTGTACT CCCTGAAGAT
CCTTCTGTTG GACGTCATTA TGTTTTTGAA GGTGACGTGG TTGTTGCACG TATTACTGAG
TACCCAACAC GCAAAAGTGC TGCTGTGGTT ACTATTGAGC GTCGTGTGGG ATCTGCCGAA
GATTTGGACA TGAACGTTGA GGCCACTATC GCTTCATATG GTTTGGCAAC AGAATTTCCC
ATTAAGGCAC TCAGACAAGC TGAAAAAATC TCTGTTGACG CAGATAAAGC TCTTGCAGAG
GACGCTTCAA GACACGATTT GCGAGAAGAG CTGTGCATTA CCGTAGATCC TGCGGATGCT
AAAGACTTTG ATGACGCTGT TGGCGCGCGC AAGCTTGAAG ATGGCAGCTT TGAGCTCTGG
GTTCATATTG CAGATGTGGC ACACTACGTG AAATGGGATT CTCCCATTGA CCTGGAAGCT
CGCATGCGCA CCTGCTCGGC ATATTTAGTT GACCGCGTGC TGCCCATGCT GCCAGAAAAG
CTCTGTAACG ACGTATGCTC TCTGCGACCA GCTGAAGACA GGCTGGCCAT GTCGGTAAAG
ATGAAATTGA GTAGCTCAGG AAAGATTCTT GGCGCAACCG CTATGAATTC TGTCATTCGT
TCAAGGGCAA GGCTTAGCTA CGACCAGGTA GATAGCTATC TTCAAGGAGA TGTCTCGGCA
CTTGACTCCG CCGTGTCTAG AGAAGACGCT GGTGCGATCA AAGAAATGAT CGACGTGCTC
AATCAAATCA GAGCACTGAG AGAAGAAATT CGCGAGAAAC GCGGCTCAGT AGATTTTGAG
AGCGTGGAGA CTCGCGTGGT ACTTGATGAG AATAACAAGC CTGTTGGCGT GTCGGTGCGA
GAGCGCACTC AGGCAACAGG TCTTATCGAG GAGGCAATGC TTGCAGCTAA CGAAAGCGTT
GCTCACATGC TCAGTCAGCA TGACCTAGAG TCAGCGTATC GCGTACATGA GCAGCCTTCT
CCAGAGTCAC TTAAGCTTGC GATTACTCCG CTTGTGGCGA TGGGCGCTCT TGAGCCAGAT
GTTGCGTCTC GTATTGCTAT TGGTGATCAA ACAGCATTGC AAGAAGCACT GGAGTCAGTT
CATGGCACAC GTTATTCTCG CGTGGTAAAT GCGCAGCTGC TCAGGGCTCA AAAACGAGCC
ATCTATCTGC CTACAAACCA GGGACACTTT GCCTTGGGAG CAGATGCGTA CTGTCACTTT
ACTTCACCAA TTAGGCGCTA TCCTGACGTG ATAGTACACC GCACATTGAA ACGATTGCTT
TGCGGTCAGA CAGCAGCTCG CGCGGAGCTG AGTGCGCTAG CGGATATCTG CAGCACGTGT
TCTGAGCAGG AGCGTAAGGC AGACGCGGCA GCTCGTGCTA CGCAAAAGAT TAAGCTGGCT
GAGTACTATC AGAGCCGTCT GGGAGAAGAG ACATGGGGCA CCATTGACGG CTGCGAGCGT
TTTGGTCTGT TCATTACGTT AGATGATACC TACGCCGATG GGCTTCTCAC CGTTAGGGAT
TTGGGCCACG AATGGTACGT GTATGATCAG GAGACGTTGG CGTTGATAGG GGAATCAACG
GGTAAAACAT ACCGCATTGG TGGACGTGTA CGCGTGAAAA TTTCTGGCGT AAATGTGGCT
CGTGGTCAGA TTGATTTGGC ACTTGTGGAA TAA
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| Protein sequence | MARKRIHKGN RRQGRAKVSK RPSTLLTGTL SLSRPGVATV STPEGMYALA KHGIHEAMHG
DEVQVSLVSA KGKAPLANVR FVLTRATQTF LGIYHDAGPL GAVVPLDSRI QRDFFVLPED
PSVGRHYVFE GDVVVARITE YPTRKSAAVV TIERRVGSAE DLDMNVEATI ASYGLATEFP
IKALRQAEKI SVDADKALAE DASRHDLREE LCITVDPADA KDFDDAVGAR KLEDGSFELW
VHIADVAHYV KWDSPIDLEA RMRTCSAYLV DRVLPMLPEK LCNDVCSLRP AEDRLAMSVK
MKLSSSGKIL GATAMNSVIR SRARLSYDQV DSYLQGDVSA LDSAVSREDA GAIKEMIDVL
NQIRALREEI REKRGSVDFE SVETRVVLDE NNKPVGVSVR ERTQATGLIE EAMLAANESV
AHMLSQHDLE SAYRVHEQPS PESLKLAITP LVAMGALEPD VASRIAIGDQ TALQEALESV
HGTRYSRVVN AQLLRAQKRA IYLPTNQGHF ALGADAYCHF TSPIRRYPDV IVHRTLKRLL
CGQTAARAEL SALADICSTC SEQERKADAA ARATQKIKLA EYYQSRLGEE TWGTIDGCER
FGLFITLDDT YADGLLTVRD LGHEWYVYDQ ETLALIGEST GKTYRIGGRV RVKISGVNVA
RGQIDLALVE
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