| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1262 |
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| Symbol | |
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| ID | 8414141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1415174 |
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| End bp | 1416601 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 645022854 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003180278 |
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| Protein GI | 257785061 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4932] Predicted outer membrane protein |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAA TAGCTAAGAG TATTTTTAGT AAGATTTGCT GCCTCTTTTC AGCAGCTCTT
CTAATTTACT CACTGGTCCC GGTTCAGGCT TTTGCTAATC CAACAAGCGG CACTGATGTT
GCGGATAGCA AGGTTACTAT TAATGGTCTT GAGTCTGGCG ATGTTGTAAG TGCATATTTA
ATTGCTGATG CAGACATTGA TGCTGCAAAT AACTTAACGT ATAAGATGGC TGACGGTCTG
CCAAGTGCTT ACAATACAAT TGATAAGATT GCAGCTGTTG CTACTGACGG TTATACCTTT
ACTCAGGGTA CAGATATGCA AAATGCTGCC GCAGCAATTG CTGGTGCCGT TACAGCAAAT
CCAGCTGCTG CTACCGCAAC GGCTGGCAGT GATGGCTCCG CTAAGCTTAC TCTTGGAAGT
GGCTACTATC TCGTTCGTGT TACCACCGCA AGTGGCAAGA CTCGCGTTTA TCAGAATATG
GTAGTTGACG TAACTCCTAA GGTTGATGGC GGAACATATA AGTCTCGCGA TGTTGCTCCT
ATTGATGTTA AGAAGACTGA CGTAACTGTT AAGAAGACTG TTGGTTCTGA GTATAAAGAG
TCAACCGATA AGTACAGCGT TGGTGATAGC GTCCCATTCA AGATTAATAC TGCTGTTCCT
AATTATCCAA AAGATTCTAA GAACGCAACT TTTACTATTG GTGATACACC TTCTGCTGGT
TTAAAGATTA AGACTGACAC CATTAAAATT AATGGTCAGA AAGCTGTATC AGGTGCAGAC
TACACTTTGA CAGCTTCTGA AACTGGCTAC ACCATTGAGT ATTCTAAAGA CTATGTTCTT
GCTCATCCTG GTGAGGCAAT CGAGGTTACT TATGAGGCAG AGCTTACTTC CGATGCTTTC
TCTCATAGCG CTACTGATGT AACTGGAAAC ACTGCTACTG TTACTTTCAA CCCAAATCCA
TATGAGAATA AGACTGTTAC TCCTAACAGC AACACTACAG TAAAGACATA TGGTTACGTC
TTTAAGAAGA CTGATCCAGA GGGCAATCCT CTTCAGGGTG CTACATTTAC CCTTACGCTT
GATAACGGTA AAGTACTCAC TTCTACTTCT GATGCAAACG GTTATGTTTA CTTCTCTGGT
CTTGCAGCAG GTCACTATAA GATTTCAGAG ACTGGCGTTC CTTCTGGATA CACCAAAGTC
AACGACATTG AGTTTGATTT AAGCGATACT ACTGCTACTG CTGATAACCC AGCTACAACT
GATGTCGAGA ACAATTATCT GGTTAATTCA CAGAATGTTG TCGATAATAG GCAGCCAGTT
CTTCCAGTAA CCGGTGACGC TGGAACCTTT ATGTTCACTG CTATTGGAAC CGTTCTGCTT
GTTGCTGGTG TAGGCGCTAT TGTGTATTCT AGAAAGCAAC GCGCATAA
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| Protein sequence | MKSIAKSIFS KICCLFSAAL LIYSLVPVQA FANPTSGTDV ADSKVTINGL ESGDVVSAYL
IADADIDAAN NLTYKMADGL PSAYNTIDKI AAVATDGYTF TQGTDMQNAA AAIAGAVTAN
PAAATATAGS DGSAKLTLGS GYYLVRVTTA SGKTRVYQNM VVDVTPKVDG GTYKSRDVAP
IDVKKTDVTV KKTVGSEYKE STDKYSVGDS VPFKINTAVP NYPKDSKNAT FTIGDTPSAG
LKIKTDTIKI NGQKAVSGAD YTLTASETGY TIEYSKDYVL AHPGEAIEVT YEAELTSDAF
SHSATDVTGN TATVTFNPNP YENKTVTPNS NTTVKTYGYV FKKTDPEGNP LQGATFTLTL
DNGKVLTSTS DANGYVYFSG LAAGHYKISE TGVPSGYTKV NDIEFDLSDT TATADNPATT
DVENNYLVNS QNVVDNRQPV LPVTGDAGTF MFTAIGTVLL VAGVGAIVYS RKQRA
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