| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1253 |
|---|
| Symbol | |
|---|
| ID | 8414132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1402546 |
|---|
| End bp | 1403460 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 645022845 |
|---|
| Product | Patatin |
|---|
| Protein accession | YP_003180269 |
|---|
| Protein GI | 257785052 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4667] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCAAAA ATCAAAATAC TTCATCTACC GCGCTTATTT TGGAAGGCGG TAGCTACCGA
GGTATTTTTA CTGCTGGCGT TTTGGATGTA CTTCGCGAGA AGGGCGTTAC AAACTTTGAA
AGTGTATGGG GAACTTCTGC TGGTGCTATT AATTCTGTGA GTTTCAAATC AAAGCAAATT
GGCCGTGCTA TGCGCATCAT GCTGGCATTT AGAGATGATC CTCGATTTAT GTCGTTTCGT
TCGCTAGTTA CAACGGGAAA CATCGCTGGC GGCGAGTTTA TGTACGAAGA AATCCAGAAT
CATCTTGATC CCTGTGATAA CGAAGCGTTC AATTCAAATC CTATGCAAAT GTATGCTGTT
GCGTCAGACG TTACGTTTGG AACTCCAGCA TATCTGCATG TAAAAAGTCT GCCAGATGAT
ATTAAGATGG TTCAAGCTTC AGCTTCGATG CCAACGGTTT CTCGTATGGT AGAACTCGAC
GGTCATCGTT ATCTTGATGG TGGGACAACT GATTCAATTC CCTTTGCAGC GGCGCTTGGT
TTACCAGATG GCCAAGCTGA GTATCCTGTT GTTATACCTG ACCATAAACC TGCAAAGAAA
GCGCTGGTCA TTGTTACGCA GGATCACGAT TACGTAAAAA CTGATATGAA TGAGCAGATT
GCTATTCGTT CGCAGTTTTA TACGGCATAT CCATATTATG AAGCTGCATT GGCTTCTCGC
TCTGAGCGTT ATATGGATCA GAGAAAACAG CTCTTTGAAT TGCAGAATGA GGGCAGAGTA
TTGGTGCTTG AGCCGCCTGA GCCAGTTGAG GTTAAAGTTA ACGAGAAGTC CGGTGAAGCC
CTGCTGTCTT TGTACTTGAC GGGTCGCAAA GTTGCCCTTG ATCGCCTTGA AGAGATTAAA
AGTTTTATTG AGTAG
|
|---|
| Protein sequence | MSKNQNTSST ALILEGGSYR GIFTAGVLDV LREKGVTNFE SVWGTSAGAI NSVSFKSKQI
GRAMRIMLAF RDDPRFMSFR SLVTTGNIAG GEFMYEEIQN HLDPCDNEAF NSNPMQMYAV
ASDVTFGTPA YLHVKSLPDD IKMVQASASM PTVSRMVELD GHRYLDGGTT DSIPFAAALG
LPDGQAEYPV VIPDHKPAKK ALVIVTQDHD YVKTDMNEQI AIRSQFYTAY PYYEAALASR
SERYMDQRKQ LFELQNEGRV LVLEPPEPVE VKVNEKSGEA LLSLYLTGRK VALDRLEEIK
SFIE
|
|---|
| |