| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1201 |
|---|
| Symbol | |
|---|
| ID | 8414079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 1347949 |
|---|
| End bp | 1349946 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022795 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_003180220 |
|---|
| Protein GI | 257785003 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCCA ACGAAGATTT GTACCAAAAT CAAACCGCTC ACTCTGAGCA CTCACCTAAC
GCAGACTCCC CTGCTGGACA GACCAGAAGA CAATTTTTGA GTAGAAGTGC TCTTGGTTTA
GCTGCTCTTG CAGGTCTTGG TCTTACTGCT TGCCAGACAA AAGGTGGCAC AACTGCTGCT
AAGGGAACCT CAAAGAAAGT TGATTCCGTA GATGGAACCT TCCAGTACGA GAAGGTTTTT
CCTGTTGCCA ATTCCGATGA TGCCTTTGAT GACTCTCTTG TTACCAACCA GCTCAACAGC
TTTGTCTGCT TTGCTGGCCA GGGCACTGTC TATGTAAAAA GTTCTGAGCC TCAAAGCTTT
GCTCTCTTTG TAAATGGTCA TCAAGTGCCA ACTGATAAGC TTGACGGTTC TTCTTGGAAC
CAAATTGACA TCTCTGACGT AACTGTCAAC GGCGATAACC GCCTGCAGGT CAGCACTGTT
AAAGAGACCC AGGCAACCTT TGAGGTCAAG ATTGGCTATC CAACCCTTAT TGACGGCACC
AAAGACTACG CTGATAATGA CAACTTCAAG TTGATTGACC AGATTATCAA CGCAGAGATT
GCCAACGGTT TTACCTCTGC CCAGCTGGTT GTTACTAGAT ACGGCAAGAT CATCAAGAAG
ACCAACTACG GCAACGTCAA TTCTTACAAC AAGGACGGCT CTCGCATCAA AGATGGCAAG
GCTGTTGACG ACAACACCCT CTACGATCTG GCTTCTAACA CAAAGATGTA TGCCACTAAC
CTAGCAATTG AGAAGCTGGT AACCGACGGC CAGCTGGATG TTTCCAAGAA GGTTCAAGAG
TACATTCCAG ACTTTAAAGA CCAAGAAGGC GATAAGATCC TGGGCAAGAA TGACCTTACT
ATTCGTGAGA TTCTTGAGCA TCAGGCTGGA TTCCCACCAG ATCCTCAGTA CCACAACCGC
AACTACAATC CAGAGAAACC CGATGATCCG CAGCCAAATG CAAACCAGAA GCTGTACTCT
CAGAATCGCG ATGAGATTCT GCAGAAGATT ATCGAGACAC CTCTGCAGTA TGTCCCAGGC
ACTAAGACTG CCTATTCCGA CGTAGACTAT ATGCTTCTTG GTTTTATCAT CGAGAAAATT
ACCAATAAGC GCCTTGACCA GTACGTTAAG GAAGCTCTTT ACGAGCCGCT GGGACTTAAA
AACGTCACGT TCAATCCACT AGACAACGGC TTCAAGGCTG ACGGAATCGC AGCTACCGAG
CTCAACGGCA ACACCCGTGA TGGTCTCATT ACCTTTGACA ACATGCGCAC AGACACCATT
CAGGGTACGG TCCATGACGA GAAGGCCTAC TACGCCATGG GCGGCATCTC TGGTCACGCT
GGTCTGTTTG CAAACGCTTC CGACCTGGCA GTTCTTGTAC AGACCGTTAT GAACCGTGGT
GGCTACGGCA ACACCATGCT CTTCAGCGAG GACGTTCACG ACCAGTTCAT CAAGCCAAAG
GACACCAGCG TCACCTATGG TTTAGGCTGG AGGCGTAAGG GTCACATTGG CTACCAGTGG
GCCTTCTCGC CAATTGCAAA CGCTGCAACC GTTGGCCACA CCGGCTGGAC CGGCACGCTC
ACCGTCATCG ACGTCTACAA CAACACCAGC TTAGTGCTGC TTACCAATAC TAAAAACTCG
CCTGTCATTG ACAACAAGGT CAACCCTAAC GACTTTGTAG GCAACCACTT CCTAACCGGC
GGCTACGGTG TTGTTTCTAC GCTGGCATTT GATGGCCTTG ACAACGCAAA CGCTGAGGGA
AACAATGCCA AGCTCATGGA CATGGTCATT GCAAAGTACA AGCTCATTCA GGCGGAAACA
GATTATCAGA CTGACCCCGA TAAGGCTTCC CTGAAGGCAC TGCTTGAGGT CTGTGACCAG
AGGAAAAATT CCAAGATTAT CAAGGACTTC CAGGCAAGTG ACTTGTACAA GACCATCTCA
GAGTTTGTTG GCAAGTAA
|
|---|
| Protein sequence | MRANEDLYQN QTAHSEHSPN ADSPAGQTRR QFLSRSALGL AALAGLGLTA CQTKGGTTAA
KGTSKKVDSV DGTFQYEKVF PVANSDDAFD DSLVTNQLNS FVCFAGQGTV YVKSSEPQSF
ALFVNGHQVP TDKLDGSSWN QIDISDVTVN GDNRLQVSTV KETQATFEVK IGYPTLIDGT
KDYADNDNFK LIDQIINAEI ANGFTSAQLV VTRYGKIIKK TNYGNVNSYN KDGSRIKDGK
AVDDNTLYDL ASNTKMYATN LAIEKLVTDG QLDVSKKVQE YIPDFKDQEG DKILGKNDLT
IREILEHQAG FPPDPQYHNR NYNPEKPDDP QPNANQKLYS QNRDEILQKI IETPLQYVPG
TKTAYSDVDY MLLGFIIEKI TNKRLDQYVK EALYEPLGLK NVTFNPLDNG FKADGIAATE
LNGNTRDGLI TFDNMRTDTI QGTVHDEKAY YAMGGISGHA GLFANASDLA VLVQTVMNRG
GYGNTMLFSE DVHDQFIKPK DTSVTYGLGW RRKGHIGYQW AFSPIANAAT VGHTGWTGTL
TVIDVYNNTS LVLLTNTKNS PVIDNKVNPN DFVGNHFLTG GYGVVSTLAF DGLDNANAEG
NNAKLMDMVI AKYKLIQAET DYQTDPDKAS LKALLEVCDQ RKNSKIIKDF QASDLYKTIS
EFVGK
|
|---|
| |