| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1129 |
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| Symbol | |
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| ID | 8414002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1279675 |
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| End bp | 1280559 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 645022718 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_003180148 |
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| Protein GI | 257784931 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCAG TAACATCACA GAATAATGCA TTAAGCTGCA GTGTTGATGC GTATGAAGAA
TCTCTTGCTG AGCCATCAGC TGCTGAAGAT CTTACTGAGT CTGAAGCCAC GCTTGTTATC
AAGCTAGGTT ATCGCGGTGC TGCTTTCTGT GGCTTTGCTG AACAGCCTAC CCAGCGTAGT
GTGGCGGGTG ACCTTCGTCG CGCGCTCGAG ACCGTTTTGC GTAGAGAGGT TGAGCTCACC
TGCGCAGGTA GAACCGATGC TGGTGTGCAC GCCCAGGTAC AGTACGTGAG CCTTCCCGTA
TACGATGCTG ATCTGTCGTT TTCTGGCGAG AAACTCGTCC GTTCGCTTAC TGCTCTGACT
GACGACGACA TCTCTATCCG ACAACTCTTC CGCGCTCCAC AGGGTTTCTC GGCACGTTTT
GACGCTCAGG CGCGCTCATA TCGTTATCGC ATTTGCGCGG ATAGTGCTCG CCCCATTTTA
GGTTGGGATC ATGTGTGGTG GTACAACGGA CACTTGGATG CAGATCTTAT GGACAAGGCC
GCGCAGGCGC TTGTAGGTGA GCATGACTTT AAGAGTTTCT GTAAGGCAAT TTCTGCTGAG
GGCAAACCGA CGCATCGTTT TGTTGAACGT CTTTCTGTTG AAGAAATTGA AGAGGCTGGC
GAGAAACTCA TTGCAGTCGA TATTACTGGC AACGCCTTCT TGCATAATAT GGTGCGAACG
ATTGTAGGCA CGCTGGTTGA GATTGGCCGA GGTCACAGAC CTGTTGAGTG GATTGATGAG
GTTTTAGCTG CCAAAAATAG AATTGCGGCA GGAAGTTGCG CACCGGCTCA GGGTCTCACG
TTTGTGAATG TCCGCTATCC AGAAGGTATT TTGCAACCTT GGTAG
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| Protein sequence | MNSVTSQNNA LSCSVDAYEE SLAEPSAAED LTESEATLVI KLGYRGAAFC GFAEQPTQRS
VAGDLRRALE TVLRREVELT CAGRTDAGVH AQVQYVSLPV YDADLSFSGE KLVRSLTALT
DDDISIRQLF RAPQGFSARF DAQARSYRYR ICADSARPIL GWDHVWWYNG HLDADLMDKA
AQALVGEHDF KSFCKAISAE GKPTHRFVER LSVEEIEEAG EKLIAVDITG NAFLHNMVRT
IVGTLVEIGR GHRPVEWIDE VLAAKNRIAA GSCAPAQGLT FVNVRYPEGI LQPW
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