| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1117 |
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| Symbol | |
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| ID | 8413990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1266011 |
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| End bp | 1267354 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 645022706 |
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| Product | UMUC domain protein DNA-repair protein |
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| Protein accession | YP_003180136 |
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| Protein GI | 257784919 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCTT CTCAAAAACA GTACCTGGTT ATTGATCTAA AAAGTTTTTA CGCATCAGTT
GAGTGCGTTG AGCGAGGCCT TGATCCTATG AAGGCTAAGC TTGTTGTGGC TGACCTTACC
AGGACAGAGA AGACAATTTG TTTGGCGGTT TCACCTGCGC TTCGCGCGTT GGGTGTTCCT
GGCCGTTGCC GAGTCTTTGA GATTCCCAAA AATTTAACCT ATGAGGTGGC ACCTCCTCGT
ATGGCTTTGT ATATTGAGCG ATCTGCAGAT GTTTATTCGG TGTATCTCAA ATATATTGCG
CCAGAAGATA TCCACGTATA CTCTATTGAC GAGGCATTTA TTGATGTAAC GCCGTACTTA
TCGCTCTATG GATGTACAGC AAGAGAGTTG GGCGAGAAAA TCCGCGCTGA CGTGGCAAAA
ACTACCGGTA TTCCTGCCAC CTGTGGTTTG GGTCCTAATT TGTATCTAGC AAAAATTGCA
CTTGATATTA CTGCAAAACA CAGCCCAAAC TTCTTTGGTG AGCTTGATGA AGAATCGTAC
AAGCTTAAAC TCTGGAATCA CAAACCTTTA ACTGATTTTT GGCATATTGG TACAGGTATT
CAAAAACGTC TAGAGGCAAT GAATATTCAT ACCATGGGGC AACTTGCTAT GGCTCCTATA
GAACCTTTGT ATAAAGAATT TGGTGTTGAT GCAGAAATTC TTATTGATCA TGCGTGGGGC
ATTGAGCCAA CCACTATTGC AGATATTAAG AACTATAAGT CGCAAAGTCA TTCAGTTTCA
ACGGCACAGG TCTTTGATCA CAATAGAGAT ACGGAAGGTG CGCGTTTTAT CTTTAAAGAG
ATGGTTGAAG CTTTGACGTT AGAACTTGTA ACCCAAAAGC TGGTTTGTTC TTCTATTGGC
ATTTATATTG GCTATTCGGC AACAGAGAGC CAGATGGAAG AACTGAGAAA AACGGGAGAT
TATAGAAGTT GGAGACGACA TATTCCTTCT AGTAGTGGTA CTAAGAAGCT CATCTATCCC
ACTAACTCTA GAGATGAACT TATGGCAGAA GTTTTATCTT TCTTTGACGA GCGCGTGCTT
CCTTCAGAGA GTGTTCATCG AGTAGGACTC ACGTTTGGAA ATACGCAAGA AGAAACAAAC
TCGGGTATTC AGACGTCGCT TTTTCAGGAT ACATACGGGC TAGAAAAAGA ACGCCAGCGC
CAAGATACTA TCAATGCCAT AAAGAAGAAG TTTGGTAAGA ACTCTTTGCT TAAGGCAATG
GATTTGCTCT CAGAAGCAAC AGCACGCCAG AGAAATGCTC AGATTGGAGG ACATCGTAGT
GGAGAAGAAA CCAATGAAAC CTAA
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| Protein sequence | MAPSQKQYLV IDLKSFYASV ECVERGLDPM KAKLVVADLT RTEKTICLAV SPALRALGVP
GRCRVFEIPK NLTYEVAPPR MALYIERSAD VYSVYLKYIA PEDIHVYSID EAFIDVTPYL
SLYGCTAREL GEKIRADVAK TTGIPATCGL GPNLYLAKIA LDITAKHSPN FFGELDEESY
KLKLWNHKPL TDFWHIGTGI QKRLEAMNIH TMGQLAMAPI EPLYKEFGVD AEILIDHAWG
IEPTTIADIK NYKSQSHSVS TAQVFDHNRD TEGARFIFKE MVEALTLELV TQKLVCSSIG
IYIGYSATES QMEELRKTGD YRSWRRHIPS SSGTKKLIYP TNSRDELMAE VLSFFDERVL
PSESVHRVGL TFGNTQEETN SGIQTSLFQD TYGLEKERQR QDTINAIKKK FGKNSLLKAM
DLLSEATARQ RNAQIGGHRS GEETNET
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