| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1113 |
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| Symbol | |
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| ID | 8413986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1261027 |
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| End bp | 1264359 |
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| Gene Length | 3333 bp |
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| Protein Length | 1110 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022702 |
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| Product | protein of unknown function DUF214 |
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| Protein accession | YP_003180132 |
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| Protein GI | 257784915 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACGCG CTCTTTTTAC CGAGATTATT CGGACTATCA AAGGGTCTCT TGCTAGATTT
CTTGCAATTG TAGGAATCGT TGCTTTGGGC TGTGGTTTTT TTGCGGGACT TAAAATGGCT
AGCCCAGATA TGCAAGAAGC TGCACATACG TTTTACAAAA ATCAGCACCT CTACGATCTT
CGCATTATCT CAACACTTGG GTTAAGCGAG AAAGACGTCC ATGCCCTTGC TTCAGTTGAG
GGTGTTGAAG CGGTTATGCC TTCTCGCACG GTAGACGTCA TGGCTACGTT GACCTCATCG
CAATCTAGCG CTCGTGTTAG TTCGTTCAGA CCTGGTGAGC TTAACCAGCC GGTAGTTGTT
GAAGGAAGGC TTCCTCAGGG GCCTTATGAG TGCGTGATGA GTGCTGATTC CAAGAAACGT
ACAGACATTA GCCTTGGCCA TCAGATTGAG CTTCCTGAGA CTTCAAATGG CGTTCATTTA
AAGGGCGGAT CGTACACGGT TGTTGGTTTT GTAAATGCGC CAACGTATCC GTATGTAAGC
AATTTTGGTA CCACGTCATT AGGCAATGGT ATTGTTCAGC AATTTGTATA TGTCACTGAA
GATGCTTTTG CTAATGATGA TCCGTACACC GAAGTGTATC TGACGGTCCA GGGCGCCACC
AGTTATAAAA GCGGCTCATC AATGTATCAG AGTGCTATTG ATAGTGTTGC AGAGCGCATT
AAACAAATGA ATCCATCGCT TGCTTCTCTT CGTTTGCAAG AGCTAAAAGA TGATGCTCAA
GCTCAGGTTG ATGAGGCTCG TCAAAAGCTG GAGCAATCAA GGCAGGAGGC TGCAGATAAA
TTAGGTGATG CACAGAAAAA GCTTGATGAA GCGGAAGCAC AGATTTCTGC TCAGCAACAA
AGACTGACTG ATGGTCAGAA GCAATATGAC GCAGGACGTC AGCAGCTTAC AACTTTACGT
TCCAGTGCTG AGCAGAAATT TGCACAAGCG GAAGCTCAGA TTAAAGCTTC AGAGGCTCAG
ATAGCCCAGG GAACAGATGA GCTTAGCGCA GGAGAGGCTC AGTATCAGGC TGGTCTTGCT
GCTTTCAATG CAGGTCAAAC GACGTTTACG CAACAAAAGA GTGAATTTGA AGCGGGTCGC
GACGCGTATC TTACAGGGCT TGCTGCACAA GGGATTACGG CTTCAACACT TGAAGAAGCG
CAGCAGCAGC TGAGGGCTTT AGGTTTACCA ACCACGCAAG TAGATGCTCT TCTCGCTACA
CAGGCACAGA TTGTGGCTGC AGAAGCAGAA TTAGCTACTC AGCAGCAGGC TTTAGCGGCA
GCGCGAGGGG AGCTTGATCA ACGTACGGCT CAGCTGCGTG AGGCAGAGTC TCAGGTAGCT
CAGGCGCGCC AAAATCTGAC AGAAGCAAGA AATGCTACTG CAGATCAGTT ATATGCAGCT
CAAGAAAAAC TTGATGCATC GCTCAGCCAA TTGACTGCTG GACAAGCTTT GCTTCAAAAT
GCAGAATCTC AGACCTATGA AGGAAGACAG AGTCTTGAGG ACCAGCGCGT TGAGATTGAG
AAACAACTTG CTGACGGTCA GACAAAAATT GACGAAGCTC AAAAGAAAAT TGATGAGCTT
AAAGAGCCTG ATGTTTATGT ACTTGATCGT ACAAAAGAGA TTGGCGTTGC AGCTTATCAA
GCAGACTCTG AGCGTATTAA CAATATTGCT AATGTGTTCC CCTTGATGTT TTTCTTGGTT
GCAGCTTTGG TTTCACTTAC CAGTATGACG CGCATGGTAT CTGAAGAGCG TACGCTCATC
GGCGTTCATA AGGCGCTTGG TTATTCGACT TTACAAATTG CTGCAAAGTA CCTGTTATAT
GCTTTGCTTG CTTCACTTTT AGGAGCTGTT ATTGGCATAG CGCTTTTAAG TCAGGTGTTG
CCAGGGGTTA TTATCTCTGC ATATGGATCA ATTTATACTA TTCCAAATGG GGGAGCTCCT
TATCCTATTC AGCTTGACAG CGCGCTTCTT TCAGGACTTT TTGGTATAGG TGTTACGCTT
CTTTCAACGA TGGCTGCTGT TTTGTCTTCT TTGAAAGAAG AACCTTCTAG CCTTATGTTG
CCAAAGGCTC CAAAAGCGGG CTCAAAGATT TTGCTTGAGC ATATTAATCC TCTGTGGTCC
AGCTTGTCTT TTTCGTGGAA AGTTACTATT AGAAACCTTG TTCGCTATAA GCGTCGCTTG
ATTATGACAT TGGTAGGAAT TGCTGGATGT ACCGCACTTT TGTTGGTGGC CTTTGGTCTT
AGAGATTCTA TTAATGACGT CATTGACAGC CAATGGCCAA CTCTTTTTCA TTATGACTAC
ATAGTAGGAA TGACCTCTGA TGTTTCTGGT GCAGAAGCAG ATCAGATTGC TACAGAGCTT
AACCAGGTCG GTGCTACAAA TATCCATCGC ATAACCAGCG AAAATGTCCT TCTTGAGTCT
CCTGCGCAAA ATGCAAGTTC GTTGACAAGA ACAACTATTA TGACCAGTAA TTCTCTTCAA
GATCTTACAG GTGTAGTTAC CTTGCGGGAT CGTCTTTCTG GTCAAACAAT AGAGCTTAAG
GAAGATTCAG TTGTAATTAC AGAGAAGCTC GCAAAACGGC TTGGCGTAGG TGTGGGAGAT
GCCGTTCGGG TCTATGCTCA AGACAGAATT GGAAATGCTT CAGGTGAACC AAGTACCCTT
ACTGTTACGG GAGTTACCGA GAATTACGTT GGATCGTATC TTTATGTAGG GCCTTCTGCA
TGGCATTCTT TGAGCATCCA AGATCAAGCA ACGGATGGTT GGTATGCAAC ACTTCCTAAA
GATCAAGCAA CAAGAGATGC GTTTGGAGAA AAACTCATTA ACCGGGCAGG GGTTGCAACT
GTCGATGACA TCAATGAGGC TATTCGCACA TATAAAAAAT CACTTGAAGT GGTTAATCGT
GTTGTAGCTA TTCTTATTTT GGCTGCAGCC CTGTTGGCAT TTATCGTCTT GTATAACCTC
ACAAATATCA ATATTGAGGA GCGTATTCGA GAGATTGCCA GCCTTAAAGT GCTTGGTTTT
ACGCGACACG AAGTTGATGC GTACGTGTTT AGAGAGATTG CTTTACTGGC CGTCTTTGGA
GCACTCTTTG GGCTTGTTCT AGGAACTTAC CTTGAGGGAT TTGTGGTTCA AACAGCTGAG
ATTGATCTTG TTATGTTTGG CCGCTCTATT CATATGTCAA GTTATTGGTT TGCTTTTGGA
CTTACCCTTG TCTTCTCACT GTTAGTGTAT GTTGCTATGC GATCAAAGCT AAAAAATATT
GATATGGTGG AGAGTCTTAA GAGTGTTGAG TAG
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| Protein sequence | MPRALFTEII RTIKGSLARF LAIVGIVALG CGFFAGLKMA SPDMQEAAHT FYKNQHLYDL
RIISTLGLSE KDVHALASVE GVEAVMPSRT VDVMATLTSS QSSARVSSFR PGELNQPVVV
EGRLPQGPYE CVMSADSKKR TDISLGHQIE LPETSNGVHL KGGSYTVVGF VNAPTYPYVS
NFGTTSLGNG IVQQFVYVTE DAFANDDPYT EVYLTVQGAT SYKSGSSMYQ SAIDSVAERI
KQMNPSLASL RLQELKDDAQ AQVDEARQKL EQSRQEAADK LGDAQKKLDE AEAQISAQQQ
RLTDGQKQYD AGRQQLTTLR SSAEQKFAQA EAQIKASEAQ IAQGTDELSA GEAQYQAGLA
AFNAGQTTFT QQKSEFEAGR DAYLTGLAAQ GITASTLEEA QQQLRALGLP TTQVDALLAT
QAQIVAAEAE LATQQQALAA ARGELDQRTA QLREAESQVA QARQNLTEAR NATADQLYAA
QEKLDASLSQ LTAGQALLQN AESQTYEGRQ SLEDQRVEIE KQLADGQTKI DEAQKKIDEL
KEPDVYVLDR TKEIGVAAYQ ADSERINNIA NVFPLMFFLV AALVSLTSMT RMVSEERTLI
GVHKALGYST LQIAAKYLLY ALLASLLGAV IGIALLSQVL PGVIISAYGS IYTIPNGGAP
YPIQLDSALL SGLFGIGVTL LSTMAAVLSS LKEEPSSLML PKAPKAGSKI LLEHINPLWS
SLSFSWKVTI RNLVRYKRRL IMTLVGIAGC TALLLVAFGL RDSINDVIDS QWPTLFHYDY
IVGMTSDVSG AEADQIATEL NQVGATNIHR ITSENVLLES PAQNASSLTR TTIMTSNSLQ
DLTGVVTLRD RLSGQTIELK EDSVVITEKL AKRLGVGVGD AVRVYAQDRI GNASGEPSTL
TVTGVTENYV GSYLYVGPSA WHSLSIQDQA TDGWYATLPK DQATRDAFGE KLINRAGVAT
VDDINEAIRT YKKSLEVVNR VVAILILAAA LLAFIVLYNL TNINIEERIR EIASLKVLGF
TRHEVDAYVF REIALLAVFG ALFGLVLGTY LEGFVVQTAE IDLVMFGRSI HMSSYWFAFG
LTLVFSLLVY VAMRSKLKNI DMVESLKSVE
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