| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1032 |
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| Symbol | |
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| ID | 8413905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1163999 |
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| End bp | 1164613 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 645022621 |
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| Product | type II secretion system protein |
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| Protein accession | YP_003180051 |
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| Protein GI | 257784834 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGATAGATC TAATTTGTTC CTTAGCATTT GCATTATGCA TAGCTATTTT CGTTTTAGTT
ATGCCTGTGA ATTTAGATCA TTGTGATGTT CGTTGTTATT ATCAGCACAT TATTAGAAGT
GTGAAGAATT TCAAAAGAGT GAACCTTCGA GCAAAATCAG AGTTTACAAG AAAATCATGC
CTACGCGAGA TGCCAGAAAT GATTGATATT TTGATTCTTG GACTGTCGTC AGGGTTATCT
TTTGATTCGG CGCTAGATCT GTATTGTTTA CGAGAATCTG GCGAACTGTC AAAAGAGCTT
TCAAATGCTC ATATGACTTG GAAGCTTGGA GCTAATACTC GCGAAGAAGC CCTAAATCAG
ATGGCAGCAA GAGTAGGGGT TCCATCGCTT AAAAGCTTTG CAACTGTTGT GAATGAGGCA
CTTACTTTTG GAACTCCTCT TGCGGAAATA TTAGATAGAC AAGCTTCAGT TCTTCGAGAT
GAGCAGCGCT CCTTGTTGGA AACAGAAATC GAAAAGATTC CAATTAAAAT GCTCATTCCT
TTAGGAACGC TTATTGTTCC AGCAATGTTA CTTGCAATTT TAGGTCCTTT GCTTGGGCCT
GCGTTTTCTT CTTAG
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| Protein sequence | MIDLICSLAF ALCIAIFVLV MPVNLDHCDV RCYYQHIIRS VKNFKRVNLR AKSEFTRKSC
LREMPEMIDI LILGLSSGLS FDSALDLYCL RESGELSKEL SNAHMTWKLG ANTREEALNQ
MAARVGVPSL KSFATVVNEA LTFGTPLAEI LDRQASVLRD EQRSLLETEI EKIPIKMLIP
LGTLIVPAML LAILGPLLGP AFSS
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