| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1016 |
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| Symbol | |
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| ID | 8413888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1152055 |
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| End bp | 1152957 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022605 |
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| Product | HAD-superfamily hydrolase, subfamily IIB |
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| Protein accession | YP_003180036 |
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| Protein GI | 257784819 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
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| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.650618 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAGAGC TTTCAACAGA AGAACTTATT ACTCAAAAAC AGTCTTGGCT TAATCAGGAT
GTATCAAATC TGAAAGTAGA AATCGTCTTC TCCGATATGG ATGAGACATT TCTCCATACC
GATAAATCTC TTGTTGCTGA TAATATGGCA ATGCTAGACC GCCTGGCAGA TCTAGGTATT
CCTTTTGTAC CTTGTTCCGG TCGAGCGTTT AACGTGCTGC CAAAAGAGGT TGTGAATCAT
CCTGCTTCTA AGTATGCGAT TTCTTGTGAC GGTGCCGTTA TTAGAGACCT TTCTACTCAG
ACAGTGCTTT ACGAGTCTAC TGTTACCAAG GAACAGGCAC TTGAGTTGTA TCAAAAGCTC
AAGAATTATC CTGTGACATT TGATATTTTT GCTGATGGCG GAGTTTACCT AGAGCGCTCA
AGGCACAACC TTATTTCTCA GCTTGGTATT CCTGCAGATC ACGCGGCGTT TATGCAGCGT
TCTCGTACAC CTTTTGACCA AAGCGTCGAG GAATTTATTA ATAGCGTATC TACCATTGAA
CGACTTGGCT CCTATTGGTC AGTTTCAGAA GGCGAGAAGT ACCAAGCACT TGTAGCAGAT
GCTGTGGCTT CGGTAAAAGG ATTGAGTGGT ACGGCTTCCA TGAGTATGGG AATGGAAATC
TTGGCTGACG GCACTTCAAA GGGCGCCGCA CTTCAATGGC TCTGCAATCA TCTTGGCATT
TCAACAGAAA ATGCTGCAGC CTTTGGCGAC TCGCTTAATG ATGTTGCTAT GCTTTCTGCT
GCAGGAATGG GCACAGCAGT TGCTAATGCT CGTCGTGAGG ATTTTGAAGC TGCAACCTAT
ATCACCTTAA CTAACGATGA GGCGGGTTTC TCGCGATTTT TAAAGTGGGC ACTGGGGGAG
TAA
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| Protein sequence | MSELSTEELI TQKQSWLNQD VSNLKVEIVF SDMDETFLHT DKSLVADNMA MLDRLADLGI
PFVPCSGRAF NVLPKEVVNH PASKYAISCD GAVIRDLSTQ TVLYESTVTK EQALELYQKL
KNYPVTFDIF ADGGVYLERS RHNLISQLGI PADHAAFMQR SRTPFDQSVE EFINSVSTIE
RLGSYWSVSE GEKYQALVAD AVASVKGLSG TASMSMGMEI LADGTSKGAA LQWLCNHLGI
STENAAAFGD SLNDVAMLSA AGMGTAVANA RREDFEAATY ITLTNDEAGF SRFLKWALGE
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