| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0971 |
|---|
| Symbol | |
|---|
| ID | 8413842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1095668 |
|---|
| End bp | 1098328 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645022559 |
|---|
| Product | ferrous iron transport protein B |
|---|
| Protein accession | YP_003179991 |
|---|
| Protein GI | 257784774 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0370] Fe2+ transport system protein B |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00437] ferrous iron transporter FeoB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000273145 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAA AAACTATTAT TGGTCTTGCA GGTAACCCAA ACTGCGGTAA GACCACCCTA
TTTAATGAGC TTACAGGCTC AAACGGCTAC GTTGGCAACT GGCCAGGCGT TACCGTTGAG
AAGAAGCAGG CAAACTGGCG TGCTGATAAG GACGTTACCT TTGTCGACCT TCCTGGTATT
TACTCATTGT CTCCTTATTC ACCTGAGGAG CAGGTATCTC GTGATTACCT CATTAATGAG
CGCCCAGACG CCATTATTGA CCTTCTTGAT GTCACCAACC TGGAGCGTAA TCTCTATTTG
ACAACTCAGG TTCTTGAGGC TGGTCGTCCT GTTGTTCTTG GTCTTAACAT GATTGATCTT
CTCAAGGAGT CCGGTGACGT CATTGACACC AAGGAACTCT CCAAGCAGCT TGGTGTTGAG
GTTGTTGAGG TTTCTGCACT TCGTAACAAG AATATTGATA CTCTGGTAAA GACTGCAATT
AAGGCTGGCC AGGATGGAAC TCCTGCTGAG GGCGTTAAGT GCTTTACCCC AGAGGTCGAA
GAAGCTCTTG GTAAGATTGC TGCTGCAATC GAGGGCATTG CGCCTGCAAC TCTGTCTCGT
TGGTACTCCA TTAAGGTCTT TGAGCGCGAT GCAAATGCTA TTGCTCCTCT TAACCTTTCT
GCCGAGAAGA TCGCAGAGCT TGAGAAGATT ATTACTGCAG TTGAGCAGTC TCGCGATGAC
GATGCTGAGT CCATCATTAC CTCTGACCGT TATGAGTGGA TTGCTGGCGT CATGGCAGCT
TGCGTTAAGA AGGCTCCAAA GCAGCTGACC ACTTCTGAGA AGATTGACCG CATTGTTACT
AATCGTATTC TCGGTCTTCC AATTTTTATT CTTGTTATGA CGCTTGTTTA TTTTGTTTCT
ATTTCTACTG TTGGTACTGG CGCTACAAAC TGGGTAAACG ATAACCTATT TGATGCTGGT
TTCCACTTTA TGGGAATCGG TGACGCTGAA TACAATGCAG CTAAAGAGGA TTTTGATTCT
CATCATTATT CAGATCAAAT TGATGCGTAT CTTGATGCTG CTGATGAAGC TGGAATTGAT
ACTACTGATG TTCGTGCGGC TATTGAGGCT AAAGAGTGGG ATTCTGACGC TATTACCAGC
TTTGAAAAAG AAGCTGCTGA GAAGAGCGTT GTTGCTCTGA GCGCTCCTGT TCACGATGAC
AACGGTAACT TTGTTGATAC TGATGATAAT CCGCTGAAGC TTGACGCTGA CGGAAAGCCA
ATTTTGGCAG ACGGTCAGGA ACTTCAGACA CTCGGCGGCG TTACTGCAGC AGGATTTAAG
AGTGCTGTTG AAGGTGCAGC GACTGAGCCT GATGCATCTG AGTACGGTAT GTTTGTTCCT
GGTATTCCAA CTCTGGTTCG CGGTGCTTTG GAGAACGCAG GAGCAAGCCC TGTTGTTACT
GGCCTTGTTG TTGATGGTGT TATCAATGGT GTTGGCTCTG TCTTGGGCTT CATCCCACAG
ATGTTTGTCC TGTTTGTCAT GTTGTCCTTC CTCGAGGACT GTGGCTACAT GAGTCGTGTT
GCCTTTGTTA TGGACCGTGT TTTCCGTCGC TTTGGTCTTT CCGGTAAGTC CTTTATTCCA
CTTCTGATTT CTTCTGGCTG TGGTGTTCCT GGCGTTCTTT CGACTCGTAC TATTGAGAAC
GAGAAGGACC GTCGTATGAC CGCAATGCTT ACTACCATGA TTCCATGTTC TGCTAAACAA
CCAATTATTG CCTTGGTTAT GGGCGTCCTT ATTGGTGGCA CAAGTGCATG GTGGGTTGCG
CCAGCGTTCT ATTTCATGGG TGTTGCAGCA ATTGTTATTT CTGCAATTAT GTTGAAGAAG
ACAAAGGCCT TTGCGGGAGA ACCTGCGCCA TTTGTTATGG AGCTTCCCGA TTACCACATG
CCATCTATTA GATCTTGGGC AATGCATGTA TGGGAGCGCA TCTCTGCTTA CATTGTTAAA
GCTGGTACGA TTATCTTCGC AGCTGCTGTT GGCATTTGGG CTCTTTCCAA CTTTGGTTGG
GCTACTTGGG AGGGTGCAAG TGGAGCCTTC GGTTACCTTC CAAGCGTTGA GGGCGCTCCT
GAGAACGTTA TGGACTTCTC CTTGCTTGCT GCTATTGGTG GTTTCATTGG CGTTATCTTT
GCTCCTCTTG GATTTGCAAA CTGGCAGGCA CCTGCTGCTT CCATCTCCGC ATTGATTGCT
AAAGAGAATC TTGTTTCTAC TTTTGGTGTT CTTTATGGTC TAGGTGATGC AAGCGAGAAG
TCAGTTACCA TGTGGTCTGG CTTTGCTGGA ATGTTCACCG ATGCTGGTGG TGTCCTCCAC
ATTGGTGCAA TGTGTGCATT TGTTGCTTTT AACATGCTTG ATGCACCTTG CTTTGCCGCA
GTTGGTACCA TTCGCCGTCA GATGAATGAC TCTAAGTGGT TCTGGTTTGC CATTGGGTAT
CAGTGCATCT TTGCATGGGT TATTGGTCTT ATTATCAATC AGCTTTGGGA GTTCTTTGTT
CTTGGTTCCT TTGGCATCTG GACCGTTATT GCCTTTGCCT TCTTGGCAGC AATTCTCTTC
CAGCTCTTCC GTCCTGCTCC AAAGTGGGAT AAGAAGGATG ACAAGATTCT CACGAGTCTT
AACGAGGTTG CAAAAGCATA A
|
|---|
| Protein sequence | MAQKTIIGLA GNPNCGKTTL FNELTGSNGY VGNWPGVTVE KKQANWRADK DVTFVDLPGI
YSLSPYSPEE QVSRDYLINE RPDAIIDLLD VTNLERNLYL TTQVLEAGRP VVLGLNMIDL
LKESGDVIDT KELSKQLGVE VVEVSALRNK NIDTLVKTAI KAGQDGTPAE GVKCFTPEVE
EALGKIAAAI EGIAPATLSR WYSIKVFERD ANAIAPLNLS AEKIAELEKI ITAVEQSRDD
DAESIITSDR YEWIAGVMAA CVKKAPKQLT TSEKIDRIVT NRILGLPIFI LVMTLVYFVS
ISTVGTGATN WVNDNLFDAG FHFMGIGDAE YNAAKEDFDS HHYSDQIDAY LDAADEAGID
TTDVRAAIEA KEWDSDAITS FEKEAAEKSV VALSAPVHDD NGNFVDTDDN PLKLDADGKP
ILADGQELQT LGGVTAAGFK SAVEGAATEP DASEYGMFVP GIPTLVRGAL ENAGASPVVT
GLVVDGVING VGSVLGFIPQ MFVLFVMLSF LEDCGYMSRV AFVMDRVFRR FGLSGKSFIP
LLISSGCGVP GVLSTRTIEN EKDRRMTAML TTMIPCSAKQ PIIALVMGVL IGGTSAWWVA
PAFYFMGVAA IVISAIMLKK TKAFAGEPAP FVMELPDYHM PSIRSWAMHV WERISAYIVK
AGTIIFAAAV GIWALSNFGW ATWEGASGAF GYLPSVEGAP ENVMDFSLLA AIGGFIGVIF
APLGFANWQA PAASISALIA KENLVSTFGV LYGLGDASEK SVTMWSGFAG MFTDAGGVLH
IGAMCAFVAF NMLDAPCFAA VGTIRRQMND SKWFWFAIGY QCIFAWVIGL IINQLWEFFV
LGSFGIWTVI AFAFLAAILF QLFRPAPKWD KKDDKILTSL NEVAKA
|
|---|
| |