| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0917 |
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| Symbol | |
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| ID | 8413788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1028299 |
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| End bp | 1030077 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 645022505 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_003179937 |
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| Protein GI | 257784720 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.340529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGATC ATATGGCTGA CAGTTTTTCC CGTCGTTCGT TCTTTGCTCT GACTGGTATC
ACCGCTGCAG GCCTTGGCCT TGCTGGCTGT GCTCCATCAA ACTCTCAGGG TGTCGGCTCT
TCCAACACTG GAACTGAGCC TCAAGACGGA TCTCCTGCAA ACACTCCTCT GGATCAGCTT
CCTCTTCCAG AGAAGGGCAA GAAGTACAAC AATCCTAAAT CTCGTGATGA GGTTCAGGAT
GGCGGTACTT TAACTCAACC AATTACTGAA GTTGGACCTC AGTGGAATTA CTACAATCTT
GCTGGTAATA CCACTTACAT GAATATTCTT CATGGTCTTA TGAATCCACG TGATTTGTTT
TATGGCAATA TTGACGGTAG TAAGTTTGAG CCTAATAAAG ATTATATTAA GGATTATAAG
GTAGAGGAGA AGGACGGCAA GCAGGTTGCT ACCCTTACTT TTACTGATCA GGCTAAGTTT
AATGATGGTA CCGATATTGA CTGGACCGCA ATTCAAACAG CATATGTTTG TCTGAGCGGT
ACAAATGAAA AATTTGAGGT TTCAAATACT GACGGCTATG ACAAGATTGA GTCTGTTGCT
CAAGGTGATA CTGCTAAAAC CGCTGTTGTT ACTATGAAAG AAGCAGTCTA TCCAATTGAA
ATGGTTTTGT CTTGGGCACT TCATCCAAAG CTTCAAGATC CAGATTTCTT TAATAATGGC
TACAACAATG AGCCAAATAA TGATCTTGGT GCTGGCCCTT ATATTGTTGA CTCACACGAT
GATTCTTCTG CTACCTTTAA GCCCAATCCT AAGTGGTGGG GAGACGCTCC TAAGCTTGAT
ACGCTTGTGT ACAAGCAGAT GGATACTCAA GCTACTATTA ATGCCTTCAA GAATGAAGAA
GTAGACACTG CTGGTGGCTC TACCTCAGGT TCTGCAGAGC TTCTCTCTAA CTTCTCTGGC
CTTGGTGATA AAGCACAGAT TCGTCGTGGC CTAGGTTTAT CTATTGCTGT TATTGAGGTT
AACTCTACTC GTGGTGTACT CCAGGATGTA GCGGTTCGTA AGGCATTCTG TCAAGTTGTT
GATCCAGCAA CTCTTGTATC CATTGTGTTC CAGGGCGTTA ACTGGAAAGA AGATACTCCT
GGTTCTATGC TTTGGCCGTA TTGGGCTGCG GGCTATGAGA ATAATCTTCC TGATGATGTC
AAGAACCTTA AGTCTGCTGA AGAGCGCACC AAGGCCGCTA AGAAGACCCT TGAGGATGCA
GGCTATTCTC TCAATGGTGA TTTCTATGAG AAGGATGGTC AGCAGGTTAC CTTTGCTTAC
ACGATGTTTG GCGATGGTAC TAATGTAAAG AACCGTGCTG CAGCAATTCA GAAGATGTGT
AAAGATGCTG GTATTAATAT GACGCTTGAC TCTCACCCAT CTTCAGAGTT CTCTAAGGTT
CTTACCTCTG GTTCTTGGGA TGTCTGCCTC TTTGGTTGGA ATGGAACCTC AACTTCTTAC
AACAATGGCG TTCAGCTTTA TGGTTCCACC TCTGCATCCA ACTTTGGTAA GCAGGGTACT
GCAGACACCG ATGCAATGTT TGCAAAGGTT GTCTCTACCA AAGACTTTGA TGAGCGTATA
AAACTTATGA ATCAGGCAGA GAAAAAGATG ATGGAAACTT ACTGTTATCT TCCAGTTTAC
ACAGGCTCTG ATTGCTATGT TGTTAAGAAG GGTCTTGCCA ACTTTGGTCC TAAGCTTTTT
GAGGATGTTC CATATACCAT TGTTGGTTGG CAGAAGTAA
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| Protein sequence | MGDHMADSFS RRSFFALTGI TAAGLGLAGC APSNSQGVGS SNTGTEPQDG SPANTPLDQL
PLPEKGKKYN NPKSRDEVQD GGTLTQPITE VGPQWNYYNL AGNTTYMNIL HGLMNPRDLF
YGNIDGSKFE PNKDYIKDYK VEEKDGKQVA TLTFTDQAKF NDGTDIDWTA IQTAYVCLSG
TNEKFEVSNT DGYDKIESVA QGDTAKTAVV TMKEAVYPIE MVLSWALHPK LQDPDFFNNG
YNNEPNNDLG AGPYIVDSHD DSSATFKPNP KWWGDAPKLD TLVYKQMDTQ ATINAFKNEE
VDTAGGSTSG SAELLSNFSG LGDKAQIRRG LGLSIAVIEV NSTRGVLQDV AVRKAFCQVV
DPATLVSIVF QGVNWKEDTP GSMLWPYWAA GYENNLPDDV KNLKSAEERT KAAKKTLEDA
GYSLNGDFYE KDGQQVTFAY TMFGDGTNVK NRAAAIQKMC KDAGINMTLD SHPSSEFSKV
LTSGSWDVCL FGWNGTSTSY NNGVQLYGST SASNFGKQGT ADTDAMFAKV VSTKDFDERI
KLMNQAEKKM METYCYLPVY TGSDCYVVKK GLANFGPKLF EDVPYTIVGW QK
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