| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0898 |
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| Symbol | |
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| ID | 8413764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1003050 |
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| End bp | 1006886 |
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| Gene Length | 3837 bp |
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| Protein Length | 1278 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022481 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_003179918 |
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| Protein GI | 257784701 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.816492 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.53056 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTG TTCACCTCCA TAACCACTCA GATTTTTCCA TTCTTGATGG AGCTAGCCGT
GTTCCAGATA TGGTTAGTAA AGCTGTAGAG TTTGGTATGC CAGCACTTGC TCTTACTGAT
CATGGGTATC TCTTTGGTAT TCCAGATTTT GACCTTGCGT GCCGTAAATA CAATGAGGCA
CTTAAAGATT TTGGCCAGTG GTGTCATGAT GTGGAATGTT TTGAAAAGGG CTGGGACTTA
GAAGAGCCTC CTGCAGACGC TCCAGATGCT CAAGAGCACG ATAGAGTCCA TGCTCAGTGG
GCTTCTGACG TTCAAATTTG GAATCAAACG CATAATATTG AGGCGGTAAA AGCCAACAAG
CCTTCTCCGC TTATCAAACC AATTTTTGGT TGTGAGGCTT ATTTCATTCT TGATGATTGT
ATTGAGAAGG GTACTAAGCA GGTACGTTAT CATCTTATTC TGCTTGCTAA AAATGAGACC
GGCTATGTCA ACTTGATGAA GATGATGTCA GAGGCTGGCT CAAAAGAGAT GTTCTATTAC
AAGCCACGTA CTACACTTGA GATGCTTAAG CGTTATCACG AGGGTATTAT CTGCACTTCA
GCCTGTGTTT CTGGCATTAT TCCTCGTATG CTGTTTGAAG GCCGTCCAGA AGAAGCAGAA
CGCTGGGCAA AAATCTATCA AGATATCTTT GGCGATGATT TTTATCTAGA GATTCAAGAT
CATGGTTTAT CTGATCCGAG TTGGGGTGGA TATACCGATA GAACTCTTGC TGAGCGTATT
GTAAAAATGG GTCATGATCT TGGTATTAAG GTAGTTGCTA CCAACGATAA TCACTATCTC
ACTAAAGAAG ACGCAAGCGT TCAAGACATT GCTTCCTGCA TTGGTTCGGG CGCTCGTGTT
GATGATGAGA ACCGTAAGCG TATGACAGGT AGTGAGTTCT ATCTTAAGAG TGAGCAAGAA
ATGCGCCAGA TTTTCTCGTG GTGTCCTGAA GCTATCGAGA ATACCATTGA GGTTGCAAAT
AAGTGCAACT ATGAGCTGGA CTGGACTCAT ATGTACCTGC CAAAGTTCCC AGACTTGGCA
GAAGGAGAGA CCTCAGAAGA GCGTTTTAGA AAAGAGTGCG AGCTTGGTCT TGCAAGGCGT
TATGGCGATG ATTGGCAAAA TGTTGTCATC AACGAAATTA ACGTTAAAGA TCGTTTTGAG
TATGAATATG ACATTATCTG CAAAAAAGGT TTTGCTGATT ACTTCTTGAT TGTTCAGGAA
TATGTTCGCT GGGCAAAAGA GAATGGCATT GGTGTAGGCC CTGGTCGTGG ATCTGCAGCA
GGCGCTATCG TTGCATACGC TATGGATATT ACCTCGTTTG ATCCTCTTGA GAATGGCCTT
ATGTTTGAGA GGTTTTTGTC TCCACAGCGT TCAGAGATGC CAGATATTGA TATGGACTTC
GACGATGAGC GTCGTCTTGA GGTTGTTGAG CATGTCCGTC AGATTTATGG ATCTGAGCGT
GTTTCTCACG TTATTACGTA CTCAACCATT AAGGCTAAAC AGGCAATAAA CGATGCTTGT
CGTGTTTTAG GTTATCCCGT TTACATGGGT CAGCGTCTGT CTAAAATGAT TCCTGGTGAC
CCTAATGCTC ACCTTAAGTT TGTTCTTCAT AAGGCTCAAG AAGGTCAAAA AGGCGCCGAT
CAGTATTCTG CTGACTTTGA AGAGGCCTAC GAGAATGACC CTGATGCTAG AAGAATTATT
GATGCTGCTC TATCTATTGA AGGCTTGCAT CGTGGTGAAG GTGTACATGC CTGTGCAGTT
TTGATTGCCC CAACACCTGT TAATGATCAC GTTCCCACCA AGGTTGATAC TAAGGGCGGC
GTAGAGATTA CGCAGTACGA GGGTCACTCT GTCGCAGACA TGGGTCTTCT TAAGATGGAC
TTCTTGGGAC TTAGAACCTT AACGGTTATT TCTCGCGCAA TTAAAAACGT GAAGGATAGC
TACGGTATTG ATATCGATGT AGATAGCATT CCATTTACAG ATCCAGAGAT TTACAGACTT
CTGAGAGAAG GACGAACTGC TGGTGTTTTC CAGGTTGAGT CTGCAGGTAT GACAGCAACC
ATTAAGGGTA TGAGACCAAC AGAATATAAG CACATCGTCG CACTTATCGC TTTGTATCGT
CCTGGTCCTC TTAACGCAGG TATGGTTACC AGCTATATCA ATCGTATGAA CGGTAGAGAA
GAAGTCAAAG ATTACGATCC ACGTCTTCAT GACATCTTGG AAGAAACCTA TGGAACCATG
GTCTACCAAG AGCAGGTTAT GCAGATTTCC ATGAAAATGT CTGGTTTTAC CGCGGGCGAG
TCTGACAAGG TTAGAAAAGC AGTAGCAAAA AAGAAGATCA AACTCATGCA GGAAGTTGTT
CAGCACTGGG ATGACGGTAC TGATGAGACC ATGGAGGCTC ACTGGAAAAA CGGTGCAGTT
CGTAATGGAT TTGATCGTTC TGTTGCAGAA AGCATCTGGG ACGATGTTCT TGAATTTGCA
TCTTATGCGT TTAACAAGTC TCACTCTGCT GGTTATGCAA TTCTTGTTAT GCAGACCGCA
TGGATTAAGG CGCATTATCC ACACGAGTTC ATGGCAGCAG TTCTTACCTC ATATATGGGC
AAGACGGATA AGATTGTTCA CTACGTAAGT GCTTGTCGTC ATGAGGGAAT CAAGATTCTT
CCACCAGATA TTAACGAGTC AGGTAAAGAC TTTACGGCTA CTAAAGAAGG TATTCGTTTT
GGCTTTGCAG GAATCCGTGG TGTAGGTGCT GGTGTTGGCG AAGCTATTAT GCTTGAGCGT
CAAAAGGGTG GTCCTTTTGC TAACATCCAC GATTTTGTTG ATCGCATGGA TGCAAGTCAG
GCAAAGCGTA ACGTTGTTGA AGCTCTTATC AAGGCAGGAG CTTTTGATTC TACAGGCTAT
ACCCGTATGC AGATGATGAG TTTTGTGGAT AAGAATAATC CTCAAAATAT TATCGATGCC
GCTACTAAGC GCCAAAAAGA TAAGGCTGTT GGTCAGTTCT CAATGTTTGA CATGTTCGCA
GAAGTAGAAG GTTCTGGTTT TAGTGATATC GTTCCAGAGC CAGATGGTGT TGAGTGGGAT
AGACGATTCA AGCTTACAAA AGAGTATGAA GTCTTAGGTA TTTACGTCTC CGATCATCCA
CTTCGTCCGT ATGAGTATGC CCTTGCTAAG AGCAGGGATT ATGCTCTTGC AGAAATTGAA
GAAAACGTAG AGGTGCAGCT TCCTAATGGT GCTATGTCTC AGCAGTTCAA AGTTCCAGAG
GGTAAACCTA TTCGCTTTGC TGGCATGGTT ACTAATGTTA TGAAGCGTAC TACTAAAAAC
GGCGATCCAA TGGCAATTGT TACGCTTGAA GATATGGAGG GTAGTGTCAC TATTGTCATG
TTCCCTAAGC TTTACAAGAA GGCTGCAAGA CTTCTGGCTG GTGATGTTGA CCCAGAGACC
GGCGAGAGCC AAAGCGATAT CTTTATTTCT GTTCTTGGAA AGCTGGAGCG TTCTGATAGA
GGTGATCAGG TTATTGCTCA GGAGGTTAGT CCTATTGAGC TTAACAGTGC CAATAACACG
CCAAAGACGC TTGTCATCCA TATGCCTGCT TCTCAGCTTG AAAGACAGGT TATCGAAACA
CTTGGACAGA TTTTCTCGCG TTATCCCGGA ATGGACTGTA TTGAAATTAG GGTGGAAACG
GATAGGGGTG ATGTCATGCG TATGGAAATT CCTACCAGAA TTGATGGACG TAGCATGGTC
CTTTTGACAG AGCTCAAAGA TCTTATCGGC CAAAGCGGAT ATGCACAGAT TGTTTAG
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| Protein sequence | MAFVHLHNHS DFSILDGASR VPDMVSKAVE FGMPALALTD HGYLFGIPDF DLACRKYNEA
LKDFGQWCHD VECFEKGWDL EEPPADAPDA QEHDRVHAQW ASDVQIWNQT HNIEAVKANK
PSPLIKPIFG CEAYFILDDC IEKGTKQVRY HLILLAKNET GYVNLMKMMS EAGSKEMFYY
KPRTTLEMLK RYHEGIICTS ACVSGIIPRM LFEGRPEEAE RWAKIYQDIF GDDFYLEIQD
HGLSDPSWGG YTDRTLAERI VKMGHDLGIK VVATNDNHYL TKEDASVQDI ASCIGSGARV
DDENRKRMTG SEFYLKSEQE MRQIFSWCPE AIENTIEVAN KCNYELDWTH MYLPKFPDLA
EGETSEERFR KECELGLARR YGDDWQNVVI NEINVKDRFE YEYDIICKKG FADYFLIVQE
YVRWAKENGI GVGPGRGSAA GAIVAYAMDI TSFDPLENGL MFERFLSPQR SEMPDIDMDF
DDERRLEVVE HVRQIYGSER VSHVITYSTI KAKQAINDAC RVLGYPVYMG QRLSKMIPGD
PNAHLKFVLH KAQEGQKGAD QYSADFEEAY ENDPDARRII DAALSIEGLH RGEGVHACAV
LIAPTPVNDH VPTKVDTKGG VEITQYEGHS VADMGLLKMD FLGLRTLTVI SRAIKNVKDS
YGIDIDVDSI PFTDPEIYRL LREGRTAGVF QVESAGMTAT IKGMRPTEYK HIVALIALYR
PGPLNAGMVT SYINRMNGRE EVKDYDPRLH DILEETYGTM VYQEQVMQIS MKMSGFTAGE
SDKVRKAVAK KKIKLMQEVV QHWDDGTDET MEAHWKNGAV RNGFDRSVAE SIWDDVLEFA
SYAFNKSHSA GYAILVMQTA WIKAHYPHEF MAAVLTSYMG KTDKIVHYVS ACRHEGIKIL
PPDINESGKD FTATKEGIRF GFAGIRGVGA GVGEAIMLER QKGGPFANIH DFVDRMDASQ
AKRNVVEALI KAGAFDSTGY TRMQMMSFVD KNNPQNIIDA ATKRQKDKAV GQFSMFDMFA
EVEGSGFSDI VPEPDGVEWD RRFKLTKEYE VLGIYVSDHP LRPYEYALAK SRDYALAEIE
ENVEVQLPNG AMSQQFKVPE GKPIRFAGMV TNVMKRTTKN GDPMAIVTLE DMEGSVTIVM
FPKLYKKAAR LLAGDVDPET GESQSDIFIS VLGKLERSDR GDQVIAQEVS PIELNSANNT
PKTLVIHMPA SQLERQVIET LGQIFSRYPG MDCIEIRVET DRGDVMRMEI PTRIDGRSMV
LLTELKDLIG QSGYAQIV
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