| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0866 |
|---|
| Symbol | |
|---|
| ID | 8413732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 960553 |
|---|
| End bp | 961944 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 645022449 |
|---|
| Product | NusB/RsmB/TIM44 |
|---|
| Protein accession | YP_003179886 |
|---|
| Protein GI | 257784669 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000084773 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.32873 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACGC TAACTCCTGC TCGAAAAGTA GCCTATCAGG CATTTTTTGA GTGCAGACGC
AACAATCTTT GCGTTCGTGA TTACTTAAGA GAGTCAAAGG ACTTCTCTGA GCTCTCTGCC
CAAGACAAAG CCTTTGCTAC GCGTCTTGCA CTGGGAGCAA CTCTTACCAA GGGTAAACTT
GATGAAGCGC TGAAAAATCA TCTTAAATCT GGTATTCATC TAGAGCCAAA GGTACAGGAT
GCTTTCCGCA TTGCCGTTTT TGAGGTTCTG TATTTAGAGA CAAGACGCGA CGCTGCTATC
AGCCAAGGTG TTGAGCTGGT AAAGTCTGTA TCAAAGCGTT CTTCAGGACT TGCGAATGCT
GTGCTTAGAA AGATTTCTGA GCATGAAGCT AACCTTGCTC GTGCAAAGGA TCCTCACACA
CCTTCAGAGC TTTCATGGGC GTCAGGTATT CCTGAGTGGA TTTGTTTGGA AATTATAGAG
TCACTTGGAA AATCTGCCGC TCAAAGGCTC ATTCTTAATT TAAAGAATCC AGCTCCCGTA
TATGTATTAC AAAGAAACTT ATCAGAACAA CAATTGCAGA ACGGTTCTTT AGAGCTACAG
AAAACACTTC TGCCTGATGT GTATGAAGTA AAAAATCCTG CTCAGCTTAA CGTTGGTGCG
TATGTAAAGA AAGTTCAGCT TGTTCCTGCA GATTTAGCAT CTCAGCTTGT TGCATTTCTC
GCTGCATCTT ATGTACATCA AAATATTCTT GAGATTGGGC AGGGTAGAGG AACTAAATCG
CTTCTGTTAT CTCATGCATT TGAGGTACTT GATAAAAAGA ATACTTATAT TACTGCTGTT
GAGCTTTTAA AAGGAAAGTC TCATATTTCA AAAAGAAGAA TGAAGGCAGC TGGTCTTAGA
GATCAGGTTA CGTCACTTAT GTTTGACGCC ACACAATTTG CGTCACCAGA GATTCCAGAG
GAGTTAAATC AGAACTTTGA CGTGGTGTTT ATTGATGCTC CTTGTTCTGG CTTGGGCACT
CTTCGTCGCC ATCCAGAGAT TGCATGGAAC CTGTCTGCAA ATAGTCTTTA TGACGGAGGA
GAGCTTACCG TTTTACAGAC CAAACTTTTG CGTAGCTGCA GCAGTCGTGT AGAAGTTGGT
GGCTATTTAA TTTATGCAAC TTGTTCGCTC TCAAATTCGG AGAATCAGCA GGTTGTAGAA
GATTTCCTTG CAAGTTCAGA GGGCTTTGAT TTTGAGGTGC AGGATCTTCA TGAATGTCCG
GCACGCACAA ATTTAATACC AGAAGCGCAA GAGTTTCTCG ACACATGTAT TACGCCAGAG
GGATTTTTAC AGACTGCTTT TGCCTCTGCT GATTGTGACG CTCATTTTAT GGCAGTCTTT
AAGCGCAAAT AA
|
|---|
| Protein sequence | MATLTPARKV AYQAFFECRR NNLCVRDYLR ESKDFSELSA QDKAFATRLA LGATLTKGKL
DEALKNHLKS GIHLEPKVQD AFRIAVFEVL YLETRRDAAI SQGVELVKSV SKRSSGLANA
VLRKISEHEA NLARAKDPHT PSELSWASGI PEWICLEIIE SLGKSAAQRL ILNLKNPAPV
YVLQRNLSEQ QLQNGSLELQ KTLLPDVYEV KNPAQLNVGA YVKKVQLVPA DLASQLVAFL
AASYVHQNIL EIGQGRGTKS LLLSHAFEVL DKKNTYITAV ELLKGKSHIS KRRMKAAGLR
DQVTSLMFDA TQFASPEIPE ELNQNFDVVF IDAPCSGLGT LRRHPEIAWN LSANSLYDGG
ELTVLQTKLL RSCSSRVEVG GYLIYATCSL SNSENQQVVE DFLASSEGFD FEVQDLHECP
ARTNLIPEAQ EFLDTCITPE GFLQTAFASA DCDAHFMAVF KRK
|
|---|
| |