| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0823 |
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| Symbol | |
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| ID | 8413688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 907438 |
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| End bp | 908739 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022405 |
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| Product | ABC-type sugar transport system periplasmic component-like protein |
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| Protein accession | YP_003179843 |
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| Protein GI | 257784626 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.596738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000464353 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAAGG TCACTACTAT GGATGTGTCT CGTCGCAGTT TTCTAAAGTT CTGTGGTCTG
GGCGTTCTTA GCGTTGGTGG ATCTAGCGTT CTTGCAGCTT GCGCACCTAG CGAGAAAAAA
GATGATACCG CTAAAAACAC AAAGGTAGAG AACAAGGATA AGCCTGTTGT CTTCTTTAAC
CGTCAGCCTT CCAACAGCTC AACTGGTGAA CTTGATACCA ACACCCTTAA CTTCAACAAG
GACACCTATT ACGTTGGCTT TGATGCAGTT CAGGGTGCAG AGCTCCAGGG CCAGATGGTT
CTTGATTACA TCAAGGCTCA TGCAGCTGAG CTTGATCGCA ACAAGGACGG CATCATTGGT
TACGTTCTTG CAATTGGTGA CATTGGTCAC AATGACTCTA TCGCTCGTAC TCGTGGCGTT
CGTAAGGCAC TTGGTACTGG CATTGAGAAG GATGGCAAGA TTATTTCTGA TCCAGTAGGT
ACTAATACTG ATGGCTCCGC TTCTGTTGTC CAGGACGGTA AGCTTGAGGT TGGTGGCAAG
TCCTACACCA TTCGTGAGCT TGCTTCTCAG GAGATGAAGA ATACCGCTGG TGCAACATGG
GATGCTGCAA CCGCTGGTAA CGCAATTGCT GCTTGGTCTT CTTCCTTCGG TGATCAGATT
GATGTTGTTG TTTCCAATAA CGACGGTATG GGTATGTCTA TCTTCAACGC ATGGTCCAAG
GCTCAGAAGG TCCCAACCTT TGGTTACGAT GCTAACTCTG ACGCTGTTGC AGCTATCGCT
GATGGCTATG CAGGCACCAT TTCTCAGCAC CCAGACGTTC AGGCTTACCT GACACTTCGT
CTGCTCCGTA ACGCTCTTGA CGGCGCTGAT ATCAATACTG GTATTGAGTC TGCAGACGAT
GCTGGCAATA AGATTGACTC CAAGGATTAC AAGTATGTTG CAGAGCAGCG TTCTTACTAT
GCTCTGAACC TTGCAGTTAC TGCTGAGAAC TACAAGGACA ATCTTGATGC AACTACTACT
TACAAGGATG CTTCTGCTCA GCTTAGCGCA GACAAGCACC CAGAGAAGAA GGTTTGGCTC
AACACCTATA ACTCTGGTGA CAACTTCCTT GGTTCAACCT ATGTTCCACT GCTCAAGAAG
TATGCTCCAC TTCTCAACCT CAACGTTGAG TTTATCGCAG GCGATGGCCA GACTGAGTCC
AACATTACCA ACCGTCTTGG CAACCCTGAT GAGTACGATG CATTTGCATT CAACATGGTT
AAGACCGACA ACGGTTCTTC CTATACCCAG CTGCTTAAGT AA
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| Protein sequence | MRKVTTMDVS RRSFLKFCGL GVLSVGGSSV LAACAPSEKK DDTAKNTKVE NKDKPVVFFN
RQPSNSSTGE LDTNTLNFNK DTYYVGFDAV QGAELQGQMV LDYIKAHAAE LDRNKDGIIG
YVLAIGDIGH NDSIARTRGV RKALGTGIEK DGKIISDPVG TNTDGSASVV QDGKLEVGGK
SYTIRELASQ EMKNTAGATW DAATAGNAIA AWSSSFGDQI DVVVSNNDGM GMSIFNAWSK
AQKVPTFGYD ANSDAVAAIA DGYAGTISQH PDVQAYLTLR LLRNALDGAD INTGIESADD
AGNKIDSKDY KYVAEQRSYY ALNLAVTAEN YKDNLDATTT YKDASAQLSA DKHPEKKVWL
NTYNSGDNFL GSTYVPLLKK YAPLLNLNVE FIAGDGQTES NITNRLGNPD EYDAFAFNMV
KTDNGSSYTQ LLK
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