| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0735 |
|---|
| Symbol | |
|---|
| ID | 8413599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 814064 |
|---|
| End bp | 814915 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 645022316 |
|---|
| Product | apurinic endonuclease Apn1 |
|---|
| Protein accession | YP_003179755 |
|---|
| Protein GI | 257784538 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.320014 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCCAG AAGAACTTTT TATTGGATGC CATCTCTCTG CAGCTAAGGG TTGGGAAGCA
ATGGGTAAGG ATGCTCTTTC AATTGGGGCA ACCACCTTTG CTTTCTTTAC TAGAAATCCT
CGTGGAGGTA ATGCTAAGGC TTTGGATGAG GTTGATATTG CAAAGCTCAG AACACTGCTT
GAGGCTCATC ATTTTGGACC TCTGGTAGCA CATGCTCCCT ACACTATGAA CCTCTGCTCC
GCTAAAGAGG AGACTAGGGA TTTTGCCCGT CGAGCACTTG CAGAAGACCT TGAGCGCATG
GAGTATCTGC CAGGTAATTA CTACAATTTC CATCCTGGAA GTCATGTTGG TCAAGGCTCT
GGAGTAGCAA TTGAACAAAT CTCGGAGGCG CTTAACAGCT GTCTCTTCGA AGGTCAGCAT
ACTTGCGTAC TTCTTGAAAC TATGGCTGGT AAAGGCACAG AAGTTGGTAA AACGTTTGAA
GAGATTGCCT CAATTCTAGA TAAGGTGGAA TATCCAGAGC TTATGGGTGT GTGTCTTGAC
ACCTGTCATG TTCATGACGG TGGCTATGAG ATTGTAGAAA ATCTTGATGA GGTTCTAGAC
ACGTTTGACC AGATTGTTGG CTTGGAAAAG CTCAAAGCAT TGCATCTTAA TGACTCCAAA
AATCCTCTTG GAGCTCATAA AGATAGACAC GAGCAGATTG GCAAAGGCTT TATTGGTTTA
GATACGTTCC GCTCTGTTGT AACTAATTCG CGCATAAACA CGCTTCCTAT GATTTTGGAA
ACTCCTCATT CTGAGCTTTC TGGGTGGAGA GAAGAAATTG CGTTACTTCG CTCTTTTTTA
GGTGATAACT AG
|
|---|
| Protein sequence | MQPEELFIGC HLSAAKGWEA MGKDALSIGA TTFAFFTRNP RGGNAKALDE VDIAKLRTLL
EAHHFGPLVA HAPYTMNLCS AKEETRDFAR RALAEDLERM EYLPGNYYNF HPGSHVGQGS
GVAIEQISEA LNSCLFEGQH TCVLLETMAG KGTEVGKTFE EIASILDKVE YPELMGVCLD
TCHVHDGGYE IVENLDEVLD TFDQIVGLEK LKALHLNDSK NPLGAHKDRH EQIGKGFIGL
DTFRSVVTNS RINTLPMILE TPHSELSGWR EEIALLRSFL GDN
|
|---|
| |