| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0665 |
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| Symbol | |
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| ID | 8413525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 740747 |
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| End bp | 741826 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 645022242 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_003179685 |
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| Protein GI | 257784468 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACTA TTTCTGTTGA CCTTACATCT GACTCATATC AAATCTATGT AGGAGATTGC
CTACTTTCAC AAACCGGCAA GCTCATTCAT TCATGCACAT CAGGTTCAAA AATTATCGTT
ATCACTCATT CAGATTTGCA AGACCTCTAC GGCGCAAAGC TTCTCGCCTC TTTAGAGACA
GCCGGTTACT CTGTCACAAC TGCAACAGTA CCCGCAGGTG AACACGCAAA ATCATTTGAG
TTATATCAAA AACTGATTAA TACCCTTGCA GAAAATCATT TTACGCGAGA AGACATTGTT
ATAGCTCTTG GCGGAGGTGT TATTGGCGAC CTCGCAGGAT TTGTTGCAGC TACCTACATG
CGCGGCTGCT CGCTCATCCA CATTCCCACC TCACTTTTGG CGATGATCGA CTCCTCGATT
GGTGGAAAAA CCGCCATTAA CCTACCATTT GGCAAAAACC TAGTTGGAGC CTTCTATAAC
CCGAGGGCGG TCATTGTTGA CCTTGAGCTA CTGAACTCCA TTCCAGTATC TCTTTTGCAG
GATAGCTGCG GCGAACTTAT TAAATACGGT GTTCTTTCTG GACGGGAGCT CTTCAATAAA
ATCGCTTTGG CGAGAAACCC AATGCAGGTC ATCGATGAAG CCTACAGAAA AGAACTCATT
CAAGCGTGCA TAGAAATAAA GAAATCAACT ATTGAAACAG ACTTTAAAGA AACAGGATTA
AGAAAATTAC TTAACCTTGG CCACACACTT GGTCATGCTG TTGAAACGCT CAGCAACTTT
GAGCTTGGAC ATGGCTCTTG TGTTGCCGCA GGAACCGTTA TGATGGCAAA GGCCTGCGCC
AAACTTAATC TTTGTTCTTA TGAAGATGCT GAGAGTATCG CTAAGCTTAC GCAGTCTTAT
GCGCTTCCTA CCAGCACCTT ATTTGATGTA GAAGAGCTTT ATAACGCAGC ACTTTATGAT
AAGAAAAGCC ACGCGGATTC AATTGATGTA GCGCTTATCT ACGGTATTGG TGATGTACGC
ATTAAACGCA AGTCATTTGC AGAACTTAAA CAACTTATTG AGCTTGCAAA GGAAGACTAA
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| Protein sequence | MNTISVDLTS DSYQIYVGDC LLSQTGKLIH SCTSGSKIIV ITHSDLQDLY GAKLLASLET
AGYSVTTATV PAGEHAKSFE LYQKLINTLA ENHFTREDIV IALGGGVIGD LAGFVAATYM
RGCSLIHIPT SLLAMIDSSI GGKTAINLPF GKNLVGAFYN PRAVIVDLEL LNSIPVSLLQ
DSCGELIKYG VLSGRELFNK IALARNPMQV IDEAYRKELI QACIEIKKST IETDFKETGL
RKLLNLGHTL GHAVETLSNF ELGHGSCVAA GTVMMAKACA KLNLCSYEDA ESIAKLTQSY
ALPTSTLFDV EELYNAALYD KKSHADSIDV ALIYGIGDVR IKRKSFAELK QLIELAKED
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