| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0647 |
|---|
| Symbol | |
|---|
| ID | 8413507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 724550 |
|---|
| End bp | 725752 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645022225 |
|---|
| Product | UDP-galactopyranose mutase |
|---|
| Protein accession | YP_003179668 |
|---|
| Protein GI | 257784451 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0562] UDP-galactopyranose mutase |
|---|
| TIGRFAM ID | [TIGR00031] UDP-galactopyranose mutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000447576 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATCA ATCATGGTCT TCCTGCCGGT TTTAACCCCG ACAACTACAA TGTTATTGTT
GTTGGAGCTG GCTATGCGGG TGCAGTTGTT GCGCGCCGTA TGGCAGAAAA CTGCAATTCA
AAGGTAGCAA TCTTTGAGCG CAGAAATCAC ATTGCCGGCA ACGCTTACGA TCGCCTTGAT
AACGCGGGTG TTCTTGTTCA CGAGTACGGT CCGCATATCT ACCACACCAT GAGTGACCGC
GTTCACCAGT TCCTCTCGCG CTTTACTGAG TGGACTAACT ACCAGCATAA GGTTTTGGCT
AACATTAACG GCCAGCTAAT GCCCGTTCCT TTTAACCACC AGTCTTTGAA GCTTGCCTTT
GGAGAAGAGC GTGGCGAGAA GCTCTATCAG AAGCTGGTTC TTACGTTTGG TGAGAATGTC
AAAGTTCCTA TCATGGAGCT TCGCGAGAAG AACGATCCAG ATCTGGAAGA GATTGCTGAT
TACGTTTACG AGAACGTTTT CCTGCATTAC ACCATGAAGC AGTGGGGAAA GACTCCAGAC
CAGATTGACA AGTCCATCAC GGGTCGTGTT CCAATTTTTG TTGGCGATGA TGACCGTTAT
TTCCCAGGCG CAACATATCA GGGTATGCCA AAAGAGGGCT ACACTAAGCT CTTTGAGAAT
ATGCTTGACC ATGATTTGAT TGACGTCTTC TTAGATGTTG ATGTCCGCGA CATTATGAAG
CTCAGTGCGT CTAACATTAG TGTTTGCGAG AAGCCATTTG TGGGTGAGGT AATTTATACC
GGTCCTCTGG ATGAGCTTTT CAATCTCGAC CAGGGTGCTC TGCCATATCG TACGCTTGAT
ATGCAGTTTG AGACGCTTGA TCAAGATCAA TTCCAGCCTG TTGGTACCGT AAATTACACC
ACTAGCGAGG ACTTTACTCG TATCACTGAG TTTAAGAATA TGACTGGTCA GGTTGTTCCA
GGTAAAACAA CTATCATGCG TGAGTACTCA CATGCATATG TTCCAGAGAG TGGTCAGACC
CCTTATTACG CCATTCTTGA GCCAGAAAAT CAGAAGCTCT ATCGCTCTTA CAAGGAGCGT
ACTTCTGGCA TCTTGAACTT CCATGCAGTT GGTCGTCTTG CTGAGTATCG TTACTACGAC
ATGGATGGCG TTGTTGCTTC TGCGCTGGAA CTCTCTGACG AGCTTATTGC TCATCAGGCA
TAG
|
|---|
| Protein sequence | MSINHGLPAG FNPDNYNVIV VGAGYAGAVV ARRMAENCNS KVAIFERRNH IAGNAYDRLD
NAGVLVHEYG PHIYHTMSDR VHQFLSRFTE WTNYQHKVLA NINGQLMPVP FNHQSLKLAF
GEERGEKLYQ KLVLTFGENV KVPIMELREK NDPDLEEIAD YVYENVFLHY TMKQWGKTPD
QIDKSITGRV PIFVGDDDRY FPGATYQGMP KEGYTKLFEN MLDHDLIDVF LDVDVRDIMK
LSASNISVCE KPFVGEVIYT GPLDELFNLD QGALPYRTLD MQFETLDQDQ FQPVGTVNYT
TSEDFTRITE FKNMTGQVVP GKTTIMREYS HAYVPESGQT PYYAILEPEN QKLYRSYKER
TSGILNFHAV GRLAEYRYYD MDGVVASALE LSDELIAHQA
|
|---|
| |