| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0409 |
|---|
| Symbol | |
|---|
| ID | 8413258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 472679 |
|---|
| End bp | 473620 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 645021977 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003179431 |
|---|
| Protein GI | 257784214 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.610294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTTC AAACCATGGA TTATTTTGTT GCCGTTGCGG AAGAAAAGAG TTTCACCAAG
GCGGCTGAGC GTTTGAGTGT GACTCAGCAA ACGCTCTCGG CAAATATTGC GGCAGCAGAA
AAAGAACTTG GCTCTAAGCT GCTGGAACGC ACTGTTCCAC TGTCTCTAAC GTTTGCTGGA
GAAGAATTTT TGCGTTATGC CCGTAGGTTC CAAGCTCAGC GTCGTGCAAT GGATCAGGAA
TTTCTTGATA TTGCAGGTAA TGAACGAGGT CGTTTGCATG TTGGCGTCAC CGCAACACGA
GGTCATATCA TCATGCCACG CTCTATTGCT GCTTTTCAAA AATTGCATCC AAATATCTCT
ATTGAGCTTG ATGAGGGCGA GAACGATGAG TTAGTTGAGT GGCTATCTGA AGGCCAACTC
GACTTGATTG TTGCAACGGT TAATTCTGCA TCGTATGACC TAGTCATTCA AAAATTGTTT
GACGAGAAGA TCGTTCTAGT AGTTTCACAA GCACTTCTTG AATCTTTATA TGCAGATAAG
GTTGACTCGG TTGTCTCGCA AGTCAAGAGA ACGGGAAAGC TCACGGCTTT AGAAGCTTGT
CCTTTTCTAA CGGTTGGTAA GCGAGACATT GCAGGTAGTT TTGCTCGCCA TGCATTTGCG
GCATCTGGTA TTTCTCCCAC CATCAAGGTT ATGTCTAGGA ACTCCGAGAC TCTTTTGGCT
CTTGCCATGA GAGGGGTTGG CGCGTGCTTC TTACCGTCGG AGCTAGTTGC CTCTTCTTAC
TACGACTTTG AAACTTCTGG CCTTCATATT ATTGAACTGG GAAAAGAGAT GTCTTACTCG
GTCAGTGTTG CTTGGCGACG CACCGATCAC GTTTGGAGTG CTATTGAGTC ATTTGCTCAG
GTTCTTTCTG AGCATCGCTA CGTTGTTAAG CGAAGTGAGT AG
|
|---|
| Protein sequence | MNFQTMDYFV AVAEEKSFTK AAERLSVTQQ TLSANIAAAE KELGSKLLER TVPLSLTFAG
EEFLRYARRF QAQRRAMDQE FLDIAGNERG RLHVGVTATR GHIIMPRSIA AFQKLHPNIS
IELDEGENDE LVEWLSEGQL DLIVATVNSA SYDLVIQKLF DEKIVLVVSQ ALLESLYADK
VDSVVSQVKR TGKLTALEAC PFLTVGKRDI AGSFARHAFA ASGISPTIKV MSRNSETLLA
LAMRGVGACF LPSELVASSY YDFETSGLHI IELGKEMSYS VSVAWRRTDH VWSAIESFAQ
VLSEHRYVVK RSE
|
|---|
| |