| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0269 |
|---|
| Symbol | |
|---|
| ID | 8413117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 312054 |
|---|
| End bp | 313046 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 645021836 |
|---|
| Product | transcriptional regulator protein-like protein |
|---|
| Protein accession | YP_003179291 |
|---|
| Protein GI | 257784074 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCG AGAAGACCCG CTGCTTGCAT CTCGTAAAAA TATTCGAGGA AGAAACTGAC
GATGACCACG GTTTGAGTAC TCCTCAGCTT ATTGAAAGAC TTGCTGAGCG TGGTCTGAGC
GTAGAGCGTA AAACGTTGTA TGACGATATT AAATCGTTGC AGAATTTTGG CTACGACATC
CAGTCCTACC AGCGTCATCC CGTTGAATAT GGCCTGGCAA CTAGGAAGTT TCAGGCTGAA
GAACTTATGC TGATGGCAGA CGCAGTGCAG TCGTCAAAGT TTTTGACGGA GCGTAAAGCA
AACAATCTGG TAAGTCTTAT CGGAGATTTA GGTGGCAAGT CCACCTCTGA TACGTTGAAG
AAGCGCATTC ATGTTGAAGG ACGTATTAAA TCGCAGAATG AGTCTGTGTT TTATGCGCTT
AATGCTATTC AGACAGCGCT TTTACAGAAG AAAAAGGTCT CATTCAAGTA TCGCAAAAAA
GGGTTTAAAG ATAAGGTTAT TGAAGAGCTG CCTGTAAGAG AAGAAACCCC TGTTCAGCTT
ACATATATTG ATGATTTCTA CTATCTTATT GTGTGGAACG ATAAGCATCA AAACTTTGTC
AATTATCGTG TTGATCGTAT GTTTAGACTT GAGGTTTCTG ATGCCGATGC CACGGTTAAC
GAACAAATAA AACGTTTTGA TATAGACAAG TATCAAGAAC GCGTCTTTGG TATGTATTCA
GGTGAGGTTG TTGCGGTAAC TCTTCGTGTT AACGAGCGCG TTATGTGCTC GGTGTATGAT
CGCTTTGGCA AGAACATCAT TTTGAATAAC TTAAGTTCTG ATGGAGCTAC AGCTGACGTG
CATGTTTCTG TAATGGAAGC TCCTACTTTT TATGGGTGGC TTGCAACATT TGGAACAGAT
ATTGAACTGG TAGCTCCAAA GAAGACCAGA CAAAAATATC AAGAGTACTT AAGTGGAATT
CTTCAGAGCT ATCAGTCACA GAAAGAAGAT TAG
|
|---|
| Protein sequence | MPSEKTRCLH LVKIFEEETD DDHGLSTPQL IERLAERGLS VERKTLYDDI KSLQNFGYDI
QSYQRHPVEY GLATRKFQAE ELMLMADAVQ SSKFLTERKA NNLVSLIGDL GGKSTSDTLK
KRIHVEGRIK SQNESVFYAL NAIQTALLQK KKVSFKYRKK GFKDKVIEEL PVREETPVQL
TYIDDFYYLI VWNDKHQNFV NYRVDRMFRL EVSDADATVN EQIKRFDIDK YQERVFGMYS
GEVVAVTLRV NERVMCSVYD RFGKNIILNN LSSDGATADV HVSVMEAPTF YGWLATFGTD
IELVAPKKTR QKYQEYLSGI LQSYQSQKED
|
|---|
| |