| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0239 |
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| Symbol | |
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| ID | 8413087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 280803 |
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| End bp | 282029 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645021807 |
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| Product | diaminopropionate ammonia-lyase |
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| Protein accession | YP_003179262 |
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| Protein GI | 257784045 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01747] diaminopropionate ammonia-lyase family
[TIGR03528] diaminopropionate ammonia-lyase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000784643 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.351019 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCAG AAATGAAGTG GGTACTTAAT AAGATGCCTC AGAGTGAAGA CAGAAATCTT
CAGGTCATGT CACTTGAAAA TGTTAAGAAG GCTCGCGCAT TTCATAAAAG CTTTCCTCAA
TATGCCGTGA CACCTTTGGC AAATCTTGAG GGTATGGCCT CTAATTTAGG TCTTGGTGGA
TTATACGTAA AAGATGAGTC GTATCGCTTT GGACTTAACG CATTTAAAGT CCTGGGTGGT
TCATTTGCTA TGGCTCGCTA TATTGCTGAT GAAACAGGAA AAGATGTTTC TGATTGCGAC
TTTGAGTATC TGACTTCAGA GCAATTGCAG AAAGACTTTG GACAGGCAAC TTTCTTTACT
GCAACCGATG GTAACCATGG CCGCGGTGTG GCATGGGCAG CAAATCGTCT TGGTCAAAAA
GCTGTTGTTC ATATGCCTAA AGGCTCTACA AAAACTCGTT TTGACAATAT TGCAAAAGAG
GGCGCACAAG TAACCATTGA AGAGCTCAAT TACGATGACT GTGTTCGTCT CGCAGCAAAA
GAAGCAGAAG AGACTGAGCA TGCAGTAATC GTACAGGACA CTGCTTGGGA TGGTTATGAG
AAGATTCCAT CTTGGATTAT GCAGGGTTAC GGTACTATGG CCTATGAGGC AGCAGAACAG
CTACGTGAGC TTGAGGTAAA CCGTCCAACA CATGTATTTA TACAAGCAGG CGTTGGATCT
TTGGCATCTG CCATGGTAGG CTACTTTACT AATTTATTCC CTTCAAATCC TCCTAAGTTT
GTCATTATGG AAGCAGGAGC TGCAGATTGT CTGTATAAGG GAGCACTTGC AGCAGATGGC
GAGCCTCGTA TTGTTGGTGG AGATTTGATT ACTATTATGG CTGGTCTTGC CTGTGGTGAG
CCAAATACCA TTGGTTGGGA TATTTTACGC AATCATGCGA CAGCCTTTAT TTCTTGTCCT
GATTGGGTTT CGGCAAAGGG CATGCGCATG CTCGCTGCTC CTGTTAAGGG AGACCCTTCT
GTTGTTTCCG GTGAGTCTGG CGCTGTTGGT ATGGGTGTGA TTTCTACTCT TATGACAGAC
CCTGCATACA AAGAGCTTCG TGATGCGCTT GATCTTACAA CAGATTCAAA GGTTCTTTTG
TTCTCTACAG AAGGAGATAC TGATCCTGTG CGTTATGAAG AGATTGTATG GGACGGTGCA
TGGCAGTCAA CAGATGACGT CAAGTAA
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| Protein sequence | MQPEMKWVLN KMPQSEDRNL QVMSLENVKK ARAFHKSFPQ YAVTPLANLE GMASNLGLGG
LYVKDESYRF GLNAFKVLGG SFAMARYIAD ETGKDVSDCD FEYLTSEQLQ KDFGQATFFT
ATDGNHGRGV AWAANRLGQK AVVHMPKGST KTRFDNIAKE GAQVTIEELN YDDCVRLAAK
EAEETEHAVI VQDTAWDGYE KIPSWIMQGY GTMAYEAAEQ LRELEVNRPT HVFIQAGVGS
LASAMVGYFT NLFPSNPPKF VIMEAGAADC LYKGALAADG EPRIVGGDLI TIMAGLACGE
PNTIGWDILR NHATAFISCP DWVSAKGMRM LAAPVKGDPS VVSGESGAVG MGVISTLMTD
PAYKELRDAL DLTTDSKVLL FSTEGDTDPV RYEEIVWDGA WQSTDDVK
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