| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0165 |
|---|
| Symbol | |
|---|
| ID | 8413012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 191706 |
|---|
| End bp | 192467 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 645021736 |
|---|
| Product | ribonuclease PH |
|---|
| Protein accession | YP_003179192 |
|---|
| Protein GI | 257783975 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0689] RNase PH |
|---|
| TIGRFAM ID | [TIGR01966] ribonuclease PH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0447089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCTG ACTCTACGCT GCAATCTAAC GCTTCTTCGC AACCTTTACG TTCGTATAAT
CGTGCGTGGG ACCAGATACG ACCGGTTACG TTAGAACGAA ATCTTATGAA GAATGCTGAT
GGATCTTGTT TGGTTAGCTT TGGTGATACG CGTGTGCTTT GTGCGGCCAC CATTGAAGAA
GGAGTTCCCG CCTGGCGTCG TGCTTCTCGT GCTGGTTGGG TGACTGCGGA ATACGCAATG
CTACCAGCAT CAACAAATCA GCGTACTAAG CGAGAGCGCG CCAACCGTAA AGGTCGCTCT
ATGGAGATTG AACGTCTTAT CGGGCGCTCC CTGCGTTCTG TTGTGGACCT GAATCGTCTT
GGCGAGTACA CCATTACGCT TGACTGCGAT GTTCTCCAAG CAGACGGTGG CACTCGAACT
GCCAGTATAA CCGGTGCGTG GGTGGCGCTT CATGATGCGC TTTTTTCGCT TGTCGAGAAG
GACGTCTTGT CCAGACTTCC CCTTACAGGT CAAGTAGCGG CAATTTCGAT GGGCGTAGTT
GATGGACAAG TGTTGCTTGA CCTGGACTAT CCTGAAGACT CACATGCAGA TATTGATATG
AATCTTGTAG GTACCGAGTC TGGCCAGATT ATTGAGGTTC AAGGTACGGG CGAAGGTGGA
CCGTTTGATC GCGAGAAACT CAATCAACTT TTAGATGTTG GCCAGGCAGG AATTGCTCAT
CTTGTTGAGC TGCAAAACCA AGTTACTGGA TTTAGGGAGT AA
|
|---|
| Protein sequence | MKSDSTLQSN ASSQPLRSYN RAWDQIRPVT LERNLMKNAD GSCLVSFGDT RVLCAATIEE
GVPAWRRASR AGWVTAEYAM LPASTNQRTK RERANRKGRS MEIERLIGRS LRSVVDLNRL
GEYTITLDCD VLQADGGTRT ASITGAWVAL HDALFSLVEK DVLSRLPLTG QVAAISMGVV
DGQVLLDLDY PEDSHADIDM NLVGTESGQI IEVQGTGEGG PFDREKLNQL LDVGQAGIAH
LVELQNQVTG FRE
|
|---|
| |