| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0144 |
|---|
| Symbol | |
|---|
| ID | 8412990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 164571 |
|---|
| End bp | 165773 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 645021714 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_003179171 |
|---|
| Protein GI | 257783954 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTACGC TTACAAAGAT AATGAGAAAA CCAATTACGT CAGCAATTGT TGCTATTTTT
GTTGGTCTGT TGGTTGCTTC TATTATTTTG GTTGTTGCAG GATATGACCC TATCAGTTCG
TTTGAGGCTC TTATTAGCGG CATGGTAGGT AAGCCAAAAT ACATTTCTAA CGTCATTATT
AAAGCAACGC CTTTGCTTTT TACTGGTATT GCAGTTGCTT TTGCTTTCCG CGTTGGCCTC
TTTAACATTG GCGCTGAGGG TCAGTACATT GTAGGTACCA TCCTTGCAGT TATTGTCGGC
TACAGCCTTG ATCTTCCTCC TGTGTTGCAG ATTCCTGTAG TTGTTTTGGT TGGAACCGCA
GGCGGAGCAG GTATTGGCGC AATTATCGGA TGGCTCAAAG CTCAGTTTGG AATCAACGAG
GTTATTACCA GCATTATGTT CAACTGGATT AGTCTCTTCC TTTGCAACTT TGTGGTTTCT
CTTCCACAGT TCCATCAGCC AAACTCAACT TCTTCGTATC CTATTAATGA GTCCGGCTAC
ACCACTTTGT TCTATGGCAT GAAGAATTCC GAGGACGGTG CTGAGGCAAT TCGTAATATT
CCTGTTATTG GCGATGCTAT TATGCGTACC GACGCAAATA TTGGTATTGT CGTTGCTATT
ATTGCAGCTT TCTTTATTGG CTGGCTGCTT ATGCGTACCA AAGTTGGTTA TGAGATGCGC
GCCGTTGGTT TTAACCGTGA TGCCGCTCAG TTTACTGGCA TTAATGTTAA GAAAAACCTC
ACGCTTTGTA TGGCTATTTC TGGTGCGCTC TGCGGACTTG CAGGTGCTTT GACTATCACT
GGTATTGCTC CTCACAGTAT TGCAACGCTA GCAGCATTTG AGAACAACGG TTTTAACGGC
CTATCTGTTG CGTTTATCGC CAATTGCAAT CCTGTGGCAT GTATTCCTGC ATCATTCCTG
TTTGCTGGTC TTCTTTATGG TGGTCAGACA GTTCAGCAGG TTGTTGGTGC ACCTTCCGAG
ATTATCAACA TTGTTATTGG TACTATCGTA TTCTTTATGG CTTTGGGTGG CGTTATTCCA
ATGCTTGCCG ATCATCTTGA TCACAAGCGT GCCCAGAAGG CTAAGGAAGA AGAGGCAAAG
CTTGCTGCTC AAGTGAGTGA TGCGTCCGAC CCATCTCAGG AGGAGGCAAA CAATGCTCAC
TAA
|
|---|
| Protein sequence | MSTLTKIMRK PITSAIVAIF VGLLVASIIL VVAGYDPISS FEALISGMVG KPKYISNVII
KATPLLFTGI AVAFAFRVGL FNIGAEGQYI VGTILAVIVG YSLDLPPVLQ IPVVVLVGTA
GGAGIGAIIG WLKAQFGINE VITSIMFNWI SLFLCNFVVS LPQFHQPNST SSYPINESGY
TTLFYGMKNS EDGAEAIRNI PVIGDAIMRT DANIGIVVAI IAAFFIGWLL MRTKVGYEMR
AVGFNRDAAQ FTGINVKKNL TLCMAISGAL CGLAGALTIT GIAPHSIATL AAFENNGFNG
LSVAFIANCN PVACIPASFL FAGLLYGGQT VQQVVGAPSE IINIVIGTIV FFMALGGVIP
MLADHLDHKR AQKAKEEEAK LAAQVSDASD PSQEEANNAH
|
|---|
| |