| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0076 |
|---|
| Symbol | |
|---|
| ID | 8412919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 86322 |
|---|
| End bp | 86882 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645021643 |
|---|
| Product | phosphodiesterase, MJ0936 family |
|---|
| Protein accession | YP_003179103 |
|---|
| Protein GI | 257783886 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0622] Predicted phosphoesterase |
|---|
| TIGRFAM ID | [TIGR00040] phosphoesterase, MJ0936 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTG TAATTGCATC AGATATTCAC GGTGCTGCTG ACTATTGCGA GAAGCTCATG
CAGGTTATAG AGGAGGAGCA ACCAAAGTAT GTTTTGCTTC TTGGAGACCT GCTTTATCAC
GGACCTCGTA ACGATCTTCC TGCAAATTAT GCACCAAAGC GTGTCATTGA AATGCTGAAT
AGTATTTCCG ATAAGGTCAT TGCTGTTCGC GGAAATTGCG AGGCAGAGGT TGACCAGATG
GTTCTCGATT TTCCGTGCAT GGCTGATTAC AACATCTTGT TTGACAAGGA TCCAAAGACT
GGCAAGCAGT TCACTATCTT CTTTACTCAC GGTCATGTCT TTGGTCCTGG TATTCACAAC
AGCGTTGATA AGTGGCCTCA GATGCCAAGC CTTGACGCGT TTGTGTACGG TCACACGCAT
AGAAAAGTTA ACATGCAGAG CGCCGATCAT CCAGAGGTCA CCGTGTTCAA CCCAGGCTCC
GTGGGCATTC CAAAAGACGG CACCCATAGC TGCGGAATCT ATGAGGATGG TAAGTTTAGG
CACGTAATTC TTGGCGAGTA G
|
|---|
| Protein sequence | MKVVIASDIH GAADYCEKLM QVIEEEQPKY VLLLGDLLYH GPRNDLPANY APKRVIEMLN
SISDKVIAVR GNCEAEVDQM VLDFPCMADY NILFDKDPKT GKQFTIFFTH GHVFGPGIHN
SVDKWPQMPS LDAFVYGHTH RKVNMQSADH PEVTVFNPGS VGIPKDGTHS CGIYEDGKFR
HVILGE
|
|---|
| |