Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0032 |
Symbol | |
ID | 8412874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 39656 |
End bp | 40579 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 645021601 |
Product | sortase, SrtB family |
Protein accession | YP_003179062 |
Protein GI | 257783845 |
COG category | [S] Function unknown |
COG ID | [COG4509] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03064] sortase, SrtB family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATCAA GAAACGGCAA ACATTTTTCA TCATTTGCCG CTGCTGATCA GCCGGCTGAA GATAATGAAG TTTTAAAAAC CTCTGTTGAA ATGATACCTA TGAAAAGCAT GGTTTCGTCT AAAAAAGATA GCAATAAGAA AAAACCTGGT AGCAAGCCTG CCAAGAAAGG TTTTTCCAAT ATCCTTTCAA CCATTTTATT GATAGTTGGA ATTGCTCTCT TAATTGCTGC AGCTATTATG TTTGGAAAAA CGCAGGTAGA TTATTATGCT CAGGATGTTA TTAATCAGGA GCTTGCAGCT TATACTACAG TTCCCGAGAA AAAAGACGAG GCTCCTGTTG TTGATTGGGC TGGTCTGAAG GCAGTGAACA GCCAAGTTGT TGGTTGGATT CAGATTCCTG GATCACAGAT TAACTATCCT GTTTACCAGA CTACGGATAA TGAGTACTAC CTCCACACCA ACGCAAAGGG AGAGTGGTCT ATCGGTGGCC AGATTTTTAT GGACTACGAG AATAATCCAA ATGGTTTAAT TGATCAGCAG ACTATTCTTT ATGGTCACCA TATGCGTAAC GGTTCCATGT TTCAATTCAT TGGTGCCTTG AACGACCAGA ATACCTTTAA TAAAGTTGAG ACTATCTGGT ATGTTACGCC TACTCAGACG TATGAGTTAG AGCCTATATT CACTTATCAT ACTGATGAGG ATGACGATGA AGTCAGGCAG TTTAACTTTA CTTCAGTGGA TGAGTTTAGG TCTTATTTAA AGGATAGGCT TTCTAGAGCA GTAAGCTCTC GCTCAGATGC GGCTGAGGTT ATTTCTCGCA CCGAGCATGT TCTTACACTC TTTACCTGTA ATTATACTGA TCAATATGGT CGTACCATGC TCATCTGTGT TCCAAAGAGT GAGGCTCAGC CAAAGACTCA GTAG
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Protein sequence | MESRNGKHFS SFAAADQPAE DNEVLKTSVE MIPMKSMVSS KKDSNKKKPG SKPAKKGFSN ILSTILLIVG IALLIAAAIM FGKTQVDYYA QDVINQELAA YTTVPEKKDE APVVDWAGLK AVNSQVVGWI QIPGSQINYP VYQTTDNEYY LHTNAKGEWS IGGQIFMDYE NNPNGLIDQQ TILYGHHMRN GSMFQFIGAL NDQNTFNKVE TIWYVTPTQT YELEPIFTYH TDEDDDEVRQ FNFTSVDEFR SYLKDRLSRA VSSRSDAAEV ISRTEHVLTL FTCNYTDQYG RTMLICVPKS EAQPKTQ
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