| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0027 |
|---|
| Symbol | |
|---|
| ID | 8412869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 34022 |
|---|
| End bp | 34867 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 645021596 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_003179057 |
|---|
| Protein GI | 257783840 |
|---|
| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
|---|
| COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.130084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATC AAAGTGACGA GAAAAACAAT GTCCAGGATA GTGCCCGGAC TAGCAGTCAG
AGCAGCGCTC AATTTAATGA CGTGTTTGAT GATATGCAGC CTACTGATCC GGAGATTATT
GATGCTGACA CGCAGGTAAC TCCAGAGGTA TTTGATTCTG CTCGCAATGA TTTACAATCG
GCAGTTGATT CGCTTACTTA TGATGGAGAG CGTGTTGCTG TGGATGATGC TGCCTACCAT
CATTCTGGTG AGCCACAAAA ACGCAGTTTT GTAGCAGGAA CCGAGGATGC GCGTGATGCC
TTTCTGGAAG AAAAATCTCT CACTGAAAAT ACCGTTTGGG TTGGCCGTAT TTTTGACGTA
AACAGACTTC GTGTTTCGTT ACCTGATGGA CGTACCGCTC TTCGTGATGT TGTGCGCCAT
CCTGGGGCTG TTGCAATTGT AGCGCTGACT GATGATGGAA GAATTTGCTT GGTTCGTCAG
TACCGAACTG CACTTGGTCG CGTGACAGTT GAGTTGCCTG CAGGAAAGCT GGACCCAGGC
GAGGATCCTC TTGATTGTGC TCACCGCGAG TTGTTGGAAG AGACAGGAAT GAAGGCGGGA
AAGATGGCGT TTCTCACCAC TACCGCCACT TCTGATGGAT TTACTGATGA GCTTATTCAT
CTCTACATGG CAACTGAGCT GATCTTTGAG GGTTCAAATC CAGATGCCGA TGAATTCATT
AACGTAGATC TTGTTCCACT ATCTGAGCTT ATAGATGCTG TTCTTGATGG CAAAATTGAG
GATGCAAAAA CTATCATTGG AGCTCTTATC TGCGATTCAA TTTCACGCCG ATTGCCTATG
GAGTAA
|
|---|
| Protein sequence | MKNQSDEKNN VQDSARTSSQ SSAQFNDVFD DMQPTDPEII DADTQVTPEV FDSARNDLQS
AVDSLTYDGE RVAVDDAAYH HSGEPQKRSF VAGTEDARDA FLEEKSLTEN TVWVGRIFDV
NRLRVSLPDG RTALRDVVRH PGAVAIVALT DDGRICLVRQ YRTALGRVTV ELPAGKLDPG
EDPLDCAHRE LLEETGMKAG KMAFLTTTAT SDGFTDELIH LYMATELIFE GSNPDADEFI
NVDLVPLSEL IDAVLDGKIE DAKTIIGALI CDSISRRLPM E
|
|---|
| |