Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0027 |
Symbol | |
ID | 8412869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 34022 |
End bp | 34867 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 645021596 |
Product | NUDIX hydrolase |
Protein accession | YP_003179057 |
Protein GI | 257783840 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.130084 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATC AAAGTGACGA GAAAAACAAT GTCCAGGATA GTGCCCGGAC TAGCAGTCAG AGCAGCGCTC AATTTAATGA CGTGTTTGAT GATATGCAGC CTACTGATCC GGAGATTATT GATGCTGACA CGCAGGTAAC TCCAGAGGTA TTTGATTCTG CTCGCAATGA TTTACAATCG GCAGTTGATT CGCTTACTTA TGATGGAGAG CGTGTTGCTG TGGATGATGC TGCCTACCAT CATTCTGGTG AGCCACAAAA ACGCAGTTTT GTAGCAGGAA CCGAGGATGC GCGTGATGCC TTTCTGGAAG AAAAATCTCT CACTGAAAAT ACCGTTTGGG TTGGCCGTAT TTTTGACGTA AACAGACTTC GTGTTTCGTT ACCTGATGGA CGTACCGCTC TTCGTGATGT TGTGCGCCAT CCTGGGGCTG TTGCAATTGT AGCGCTGACT GATGATGGAA GAATTTGCTT GGTTCGTCAG TACCGAACTG CACTTGGTCG CGTGACAGTT GAGTTGCCTG CAGGAAAGCT GGACCCAGGC GAGGATCCTC TTGATTGTGC TCACCGCGAG TTGTTGGAAG AGACAGGAAT GAAGGCGGGA AAGATGGCGT TTCTCACCAC TACCGCCACT TCTGATGGAT TTACTGATGA GCTTATTCAT CTCTACATGG CAACTGAGCT GATCTTTGAG GGTTCAAATC CAGATGCCGA TGAATTCATT AACGTAGATC TTGTTCCACT ATCTGAGCTT ATAGATGCTG TTCTTGATGG CAAAATTGAG GATGCAAAAA CTATCATTGG AGCTCTTATC TGCGATTCAA TTTCACGCCG ATTGCCTATG GAGTAA
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Protein sequence | MKNQSDEKNN VQDSARTSSQ SSAQFNDVFD DMQPTDPEII DADTQVTPEV FDSARNDLQS AVDSLTYDGE RVAVDDAAYH HSGEPQKRSF VAGTEDARDA FLEEKSLTEN TVWVGRIFDV NRLRVSLPDG RTALRDVVRH PGAVAIVALT DDGRICLVRQ YRTALGRVTV ELPAGKLDPG EDPLDCAHRE LLEETGMKAG KMAFLTTTAT SDGFTDELIH LYMATELIFE GSNPDADEFI NVDLVPLSEL IDAVLDGKIE DAKTIIGALI CDSISRRLPM E
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