Gene Apar_0011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0011 
Symbol 
ID8412851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp14882 
End bp15961 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content45% 
IMG OID645021579 
ProductABC transporter related 
Protein accessionYP_003179042 
Protein GI257783825 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTACAG AGAAAAAAGG CGTACGCCTT GAGCACATTT CTAAGATTTA TCAGGATCAA 
AAAACTGGAA AAGACTTCTA TGCAGTTCAA GATGCTAATA TCACTATTGA TCCTGGTGAG
TTTGTAACAT TACTTGGACC CTCTGGCTGC GGAAAAACCA CTATTCTGCG CATGATTGCT
GGTTTTGAAA GCCCTGATGA GGGAAAGATT TTCCTTGGTG ATGAGCAGAT TGATGAGCTT
ACTCCAAACA AGCGCGATAC CGCCATGGTG TTCCAGAGCT ATGCGCTTCT GCCTCACTAC
AATATCTTTG ACAACGTTGC ATACGGTCTT AAGCTCCGCA AAATGGACAA GGCAATAATT
CGCGAGAAGG TCCTTCACAT CCTAGATCTT GTTGGACTTG AAGGTATGGA AGAGCGCATG
ACCAATCAGC TTTCCGGTGG TCAACAGCAG CGTGTTGCTT TAGCACGCGC TCTGGTTATT
GAGCCAAGCG TTCTTCTCTT TGATGAGCCT CTTTCAAACC TTGATGCAAA ACTGCGCGTT
GATATGCGCA ACGAGATTCG TCGCATTCAG CAGGAGGCTG GCATTACTGC TATTTACGTT
ACACATGACC AGTCAGAGGC AATGGCGCTT TCCGACAACA TTATCATCAT GAAGAAGGGT
GTTGTGGATC AAGTTGGTGA TCCACAGACG GTTTATTACC ATCCAGCAGA TGAGTTTGTT
GCAGACTTTA TTGGTGAATC AAATTTTTTG CATGCAACCA TTGCAGAAAA GCTTGACTCT
GAGACTGCTC TTTGTCGCTT TGAGGGTCAC GAGTTTGAGG TTAGCGGATG CTCTCATCTG
GATAAAGGCA AAGAATGCTG TATTGTTCTT CGCCCGGAGT CCGCACGTCT CACCGATGAA
GGAACCCTTT CCTGTGAGGT GGTACTTTCC CGATTCATGG GTCACTATCA GAACTATCAT
GTTATGGTCG GAGACACGCT CATTAAAATT ACGGACTTCA ACCCTCGCAC ACATAAGGTT
TATAACGTTG GAGATCACGC TTTTGTTGAT TTCACCAAAG ACGAGGTCCA CGTTCTATAA
 
Protein sequence
MATEKKGVRL EHISKIYQDQ KTGKDFYAVQ DANITIDPGE FVTLLGPSGC GKTTILRMIA 
GFESPDEGKI FLGDEQIDEL TPNKRDTAMV FQSYALLPHY NIFDNVAYGL KLRKMDKAII
REKVLHILDL VGLEGMEERM TNQLSGGQQQ RVALARALVI EPSVLLFDEP LSNLDAKLRV
DMRNEIRRIQ QEAGITAIYV THDQSEAMAL SDNIIIMKKG VVDQVGDPQT VYYHPADEFV
ADFIGESNFL HATIAEKLDS ETALCRFEGH EFEVSGCSHL DKGKECCIVL RPESARLTDE
GTLSCEVVLS RFMGHYQNYH VMVGDTLIKI TDFNPRTHKV YNVGDHAFVD FTKDEVHVL