| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_3057 |
|---|
| Symbol | |
|---|
| ID | 8412610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | - |
|---|
| Start bp | 2944291 |
|---|
| End bp | 2946144 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 645021404 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_003178869 |
|---|
| Protein GI | 257389096 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.901701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.440204 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGGGT GGTTCAGCCG TTCGACGCCG GCCCCCGACT GCGGATGTAC AGTACGACGA
GGACGCAACG ACACCGGCGA GACGCTGCTG GTCGACGCCA CGGACTGTCC AGACGGCGGT
CGACTGGCCG AGTCGCCAGC CTGTCGCCGG ACGGTCGTCG AGGCGCTCGC CGAACGCGAC
GCCGAGCGCG TGGTGACGCG GTCGAACGGT CGCGAACGGG CCTATCTCGA CGATCACGCG
GCCCTGCTCT GTGCGGCCGG CCGGTTCGTC GAACGGACGC GGTTCCACGA CGAGGCCCTC
GCCGAACGGG CCGTGACCGA TCCGATCGAC GCCGCCCGGG AGGCCGTGGG TCGCGCGGGT
CCAGTCGCGT CGATCGCAGC GGAGACCGGC CTGGGGCTGT GTGCTCGTCG AGTCGGCGAG
ATCGCGTCGC TCTCCCCGCA CGTCGGCCCG ACCATCGGAC ACACCCGTCT CGGGGCCGAC
CCGCCGGCCG ACGGTCGGCT CCGCGACAGC CGGCGGCTCT CGACTGGCGG ACGCGTGCGA
CTCTACGAAC GCGACGACGA CCTCCCGGTG TATCACCTCG AACCGCTCGG GGCTACGCTG
GACGACGCTG CGATGGCGAC GCTCGAACGC GGTCGGGAGC TCGTCGCCGA CGGGACGGTG
ACCGGCGAGC GTGCCGCCTG GCGTGCGATC CGGACCGTCG CTTGCGAGGA CGATCCGGTC
GAACGGCTCG GACGCGTGCT CGACCGACAC ACCGCCGGGT ACGGCGTCCT CGCCGAGTGC
TTCGACGACC CGCGCGTGAC GGACGTGTTC GCGACCGCGC CGGTCGCGTC GAACCCGCTT
CGGGTACGCG TCGACGGGGA ACTGGCGACG ACGAACGTTC GGGTGAGCCG GCGCGGCGTC
GAAGCACTCG CCTCGCAGTT CCGCCGCGAG AGCGGACGGG CGTTCTCGCG AGCCAGCCCG
ACGCTTGACG CCACCACGAC GGTCGGCGAC CGGCGGGTCA GGATCGCCGG GACGACAGCG
CCGGTCAGTG ACGGCCCGGC CTTCGCGCTG CGAGCCCACG ACCGGACGGT GTGGACGCTC
CCACAGCTCG TCGACAACGA CACCGTCCCG CCGGCAGCCG CCGCACTGCT CTCGCTGGCG
GTCGACCGTG CGGCTGCCAC GCTGGTCGCC GGCCCCCGCG GAGCGGGCAA GACGACGCTG
CTGGGCGCGT TGCTGTGGGA GCTCGACCCC GGCGTACGAA CGCTGGTCAT CGAGGACACC
CCGGAGCTGC CGGTCGCACA GCTCCAGGCC GACGGACGGG AGGTCCAGTC ACTGGTGACG
GCGCGGGGCG ACGGTCCCGG ACTGCCGGCC GACGAGACGC TGCGGACGGC GCTCAGACTC
GGCGAGGGGG CGCTCGCGGT CGGCGAAGTC CGCGGCGAGG AGGCCCAGGT CCTCTACGAG
GCGATGCGTG TCGGTGCCGG CGGTAGTGCC GTTCTGGGGA CGATCCACGG CGACGGGGGC
GAGGACGTGC GCGAACGCGT CGTCGCCGAC CTCGACGTGC CCGCCTCGTC GTTCGCGACG
ACTGATCTCG TCGTCACCAT GGGGCGCTTC GAGACCGAGG ACGGGCCGGC GCGTCGCGTC
GCGGCGATCG AGGAGGTCGT CTCCGCTGGG GACGCGGTGG ACTTCGAGCC GCTGTATCGG
CTCCGGGAGG GACGCTTGCA GTCGACCGAT CGGCTGGAAC GGGGCAACAG CGAACTCCTC
GCTGCGCTGG CCGACAGCGA CGAATCCTAC GCCGACGTGC GTGCGGGACT GACCGAGCGC
ACGGACGAGA TCAGACGCCG GGAACGAAGA ACTGGCCGGA CGGTCGAGGC ATGA
|
|---|
| Protein sequence | MRGWFSRSTP APDCGCTVRR GRNDTGETLL VDATDCPDGG RLAESPACRR TVVEALAERD
AERVVTRSNG RERAYLDDHA ALLCAAGRFV ERTRFHDEAL AERAVTDPID AAREAVGRAG
PVASIAAETG LGLCARRVGE IASLSPHVGP TIGHTRLGAD PPADGRLRDS RRLSTGGRVR
LYERDDDLPV YHLEPLGATL DDAAMATLER GRELVADGTV TGERAAWRAI RTVACEDDPV
ERLGRVLDRH TAGYGVLAEC FDDPRVTDVF ATAPVASNPL RVRVDGELAT TNVRVSRRGV
EALASQFRRE SGRAFSRASP TLDATTTVGD RRVRIAGTTA PVSDGPAFAL RAHDRTVWTL
PQLVDNDTVP PAAAALLSLA VDRAAATLVA GPRGAGKTTL LGALLWELDP GVRTLVIEDT
PELPVAQLQA DGREVQSLVT ARGDGPGLPA DETLRTALRL GEGALAVGEV RGEEAQVLYE
AMRVGAGGSA VLGTIHGDGG EDVRERVVAD LDVPASSFAT TDLVVTMGRF ETEDGPARRV
AAIEEVVSAG DAVDFEPLYR LREGRLQSTD RLERGNSELL AALADSDESY ADVRAGLTER
TDEIRRRERR TGRTVEA
|
|---|
| |