| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_1808 |
|---|
| Symbol | |
|---|
| ID | 8411334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | + |
|---|
| Start bp | 1728638 |
|---|
| End bp | 1730137 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 645020138 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_003177629 |
|---|
| Protein GI | 257387856 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.848054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.460632 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACTGC TCGACCGGAT CCGAGCGCTG TTCAAAGGTC CCGAGGAGTT CGATCTCACC
TCGGGGAGCA TCGGCAAGCC CCTCTTTTTC CTGTCGATGC CGATCGTGAT CACGAACCTC
TTCCAGACGG CCTACAACCT CGCGGACACC TTCTGGCTCG GCCAGTACAG CACGGACGCG
CTGGCCGCGA TTAGCTTCGC GTTCCCGATG GTGTTCCTGC TCATCTCGCT TGGCATGGGC
ATCTCCGTCG CCGGGAGCGT GCTCGTCGCT CAGTACACGG GTGCCGGCGA GGAGCGAGAG
GCGGAGTACG CGGCCTCTCA GACGGTGACC TTCGCGGCTA TCGCGTCGGT CGTGCTCGGC
GTCGTCGGCT TCTTCGCCGT CGAGGCGTTC CTCGGCGTGA TGGGCGCGTC CGCGGACGTG
TTGCCCCTGG CGACGAGCTA CATGGAACTG ATCTCGCTGG GACTGCTCTT CATGTTCGGC
TTCGCCGTGT TCATCGCGCT CATGCGGGGC TACGGCGACA CCATCACCCC GATGGTGGTG
ATGTTCGGGT CGGTGGTGCT CAACATCGTC ATCGACCCGT TCCTGATCTT CGGCTTCGAG
AGCAATCCGC TGTTCTCGAT GCTCGACCTG GGGAGCCTCG AAGCGACGCT GCTGGCGGCG
ACGGGCTACA CGGGATCGGG CATCACCGGG GCGGCCATCG CGACGATCTT CTCGCGGGCG
GTCGCACTCG TCGTCGGCCT CACGATCATG TTCCGTGGCA GGCGGGGCGT CCAGATCCAC
CTCGGCGACA TGGTGCCCGA TCTCGACTAC CTCCCGCGGC TCGTCCGGAT CGGCCTGCCG
GCGTCGGTCG AGGGGATGGG GCGGGCGCTG TCGATGAACC TCCTGCTGTT CATCGTCGCG
TTCTTCCCCG ACGCCGTCGT CGCCGCCTAC GGCATCGGGA CGCGCGTGTT CTCGGTGATC
TTCCTGCCGG CGATCGCCGT CGCCCGCGGC GTCGAGACGA TGACCGGCCA GAACATGGGC
GCGGACAAAC CCGACCGGGC CCAGCGAGCG ACCGGGCTCG CCGCGACGGT CCTCTTCGGC
GTGCTCTCGG CCGCGGGGAT CCTCGTCTTC TTCGTCGCCG CACCCATCGC CGACGTGTTC
ACGACCGATC CCGAAGTCGT CGCCGTCGCG ACGCAGTTCC TGCGCTACGT CGCGCTGACC
TTCGGCTTTA TCGGAATCAT GCGGGCGTAC ACGGGGAGTT TCCGCGGGGC CGGCAAGACG
CTCACCGCTG CGGCGATCTC CGTGCTGATG CTCGGGGTCA TCCGGTTCCC CATCGCGTGG
TTCGCGGCCG GCGAGATCGG CGAGACCGGG ATCTGGCTCT CCTTCGCGAT CTCGAACGTC
GCCGGTGCGG TGATCGCCTA CGGGTGGTAT CGTCGCGGGA CGTGGCGCGA CAACGATCTC
ACCGAGGACG GAATCGACCT CGACGACGCG GGGATGGAGC CCGCGACGAC GGACGACTGA
|
|---|
| Protein sequence | MGLLDRIRAL FKGPEEFDLT SGSIGKPLFF LSMPIVITNL FQTAYNLADT FWLGQYSTDA
LAAISFAFPM VFLLISLGMG ISVAGSVLVA QYTGAGEERE AEYAASQTVT FAAIASVVLG
VVGFFAVEAF LGVMGASADV LPLATSYMEL ISLGLLFMFG FAVFIALMRG YGDTITPMVV
MFGSVVLNIV IDPFLIFGFE SNPLFSMLDL GSLEATLLAA TGYTGSGITG AAIATIFSRA
VALVVGLTIM FRGRRGVQIH LGDMVPDLDY LPRLVRIGLP ASVEGMGRAL SMNLLLFIVA
FFPDAVVAAY GIGTRVFSVI FLPAIAVARG VETMTGQNMG ADKPDRAQRA TGLAATVLFG
VLSAAGILVF FVAAPIADVF TTDPEVVAVA TQFLRYVALT FGFIGIMRAY TGSFRGAGKT
LTAAAISVLM LGVIRFPIAW FAAGEIGETG IWLSFAISNV AGAVIAYGWY RRGTWRDNDL
TEDGIDLDDA GMEPATTDD
|
|---|
| |